myRT

myRT report for GCA_000262445.1_ASM26244v1

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Seq: CM001486.1 Thermoanaerobacter siderophilus SR4 chromosome, whole genome shotgun sequence (2540159 bp)
Overview 1 RT 1: 68427-75264 bp 2 RT 2: 93618-102564 bp 3 RT 3: 377800-384452 bp 4 RT 4: 1350478-1355914 bp 5 RT 5: 1778977-1783834 bp 6 RT 6: 1841773-1846796 bp 7 RT 7: 1932747-1939057 bp 8 RT 8: 2424054-2431793 bp Neighborhood of RT #1 [68427, 75362] PTS-II-BC-nag DUF820 RVT-GII GIIM Tar Neighborhood of RT #2 [93618, 102566] pyruv_ox_red Ferritin_CCC1_N Ferritin_CCC1_C RVT-GII GIIM M42_Frv FrvX Neighborhood of RT #3 [377800, 384481] Med PurR RVT-GII GIIM MviM HTH_24 NagC Neighborhood of RT #4 [1350478, 1355943] lipoamide_DH PRK01202 RVT-GII GIIM NagC Adenine_glyco Neighborhood of RT #5 [1778977, 1783834] PRK04180 PdxT RVT-GII GIIM LT_GEWL_like Neighborhood of RT #6 [1841773, 1846879] Amj RNaseH_like RVT-GII GIIM PAP2_like_3 Yip1 Yip1 Neighborhood of RT #7 [1932747, 1939068] PRK13914 PRK13914 Spr TypA RVT-GII GIIM CsoR-like_DUF156 NifS Neighborhood of RT #8 [2424054, 2431942] LolE LolE PaaK RVT-GII GIIM nagB HTH_24 Feature: gene Location: 68427-69827 bp Feature: domain Description: PTS-II-BC-nag Location: 68445-69795 bp Feature: domain Description: PTS-II-BC-nag Location: 68445-69795 bp Feature: gene Location: 70112-70699 bp Feature: domain Description: DUF820 Location: 70178-70652 bp Feature: domain Description: DUF820 Location: 701 78-70652 bp Feature: gene Location: 70763-72175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71111-71729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 1 1 1 -71 729 bp Feature: domain Description: GIIM Note: maturase Location: 71780-72005 bp Feature: domain Description: GIIM Note: maturase Location: 71 780-72005 bp Feature: gene Location: 72646-73593 bp Feature: gene Location: 73716-75362 bp Feature: domain Description: Tar Location: 74022-75264 bp Feature: domain Description: Tar Location: 74022-75264 bp Feature: gene Location: 93618-97145 bp Feature: domain Description: pyruv_ox_red Location: 93633-97134 bp Feature: domain Description: pyruv_ox_red Location: 93633-971 34 bp Feature: gene Location: 97443-98531 bp Feature: domain Description: Ferritin_CCC1_N Location: 97461-97860 bp Feature: domain Description: Ferritin_CCC1 _N Location: 97461 -97860 bp Feature: domain Description: Ferritin_CCC1_C Location: 97878-98505 bp Feature: domain Description: Ferritin_CCC1 _C Location: 97878-98505 bp Feature: gene Location: 98698-100110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99046-99664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99046-99664 bp Feature: domain Description: GIIM Note: maturase Location: 99715-99940 bp Feature: domain Description: GIIM Note: maturase Location: 9971 5-99940 bp Feature: gene Location: 100568-101551 bp Feature: domain Description: M42_Frv Location: 100586-101540 bp Feature: domain Description: M42_Frv Location: 1 00586-1 01 540 bp Feature: gene Location: 102420-102566 bp Feature: domain Description: FrvX Location: 102423-102564 bp Feature: domain Description: FrvX Location: 1 02423-1 02564 bp Feature: gene Location: 377800-378933 bp Feature: domain Description: Med Location: 377821-378874 bp Feature: domain Description: Med Location: 377821 -378874 bp Feature: gene Location: 379267-380271 bp Feature: domain Description: PurR Location: 379276-380260 bp Feature: domain Description: PurR Location: 379276-380260 bp Feature: gene Location: 380481-381893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380829-381447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380829-381 447 bp Feature: domain Description: GIIM Note: maturase Location: 381498-381723 bp Feature: domain Description: GIIM Note: maturase Location: 381 498-381 723 bp Feature: gene Location: 382343-383260 bp Feature: domain Description: MviM Location: 382346-383243 bp Feature: domain Description: MviM Location: 382346-383243 bp Feature: gene Location: 383279-384481 bp Feature: domain Description: HTH_24 Location: 383330-383450 bp Feature: domain Description: HTH_24 Location: 383330-383450 bp Feature: domain Description: NagC Location: 383507-384452 bp Feature: domain Description: NagC Location: 383507-384452 bp Feature: gene Location: 1350478-1351887 bp Feature: domain Description: lipoamide_DH Location: 1350523-1351879 bp Feature: domain Description: lipoamide_DH Location: 1 350523-1 351 879 bp Feature: gene Location: 1351976-1352356 bp Feature: domain Description: PRK01202 Location: 1351982-1352348 bp Feature: domain Description: PRK01 202 Location: 1 351 982-1 352348 bp Feature: gene Location: 1352814-1354226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353162-1353780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3531 62-1 353780 bp Feature: domain Description: GIIM Note: maturase Location: 1353831-1354056 bp Feature: domain Description: GIIM Note: maturase Location: 1 353831 -1 354056 bp Feature: gene Location: 1354413-1355360 bp Feature: domain Description: NagC Location: 1354431-1355352 bp Feature: domain Description: NagC Location: 1 354431 -1 355352 bp Feature: gene Location: 1355371-1355943 bp Feature: domain Description: Adenine_glyco Location: 1355389-1355914 bp Feature: domain Description: Adenine_glyco Location: 1 355389-1 35591 4 bp Feature: gene Location: 1778977-1779855 bp Feature: domain Description: PRK04180 Location: 1778986-1779853 bp Feature: domain Description: PRK041 80 Location: 1 778986-1 779853 bp Feature: gene Location: 1779836-1780420 bp Feature: domain Description: PdxT Location: 1779863-1780412 bp Feature: domain Description: PdxT Location: 1 779863-1 78041 2 bp Feature: gene Location: 1780862-1782274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781210-1781828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 781 21 0-1 781 828 bp Feature: domain Description: GIIM Note: maturase Location: 1781879-1782104 bp Feature: domain Description: GIIM Note: maturase Location: 1 781 879-1 7821 04 bp Feature: gene Location: 1782334-1782906 bp Feature: domain Description: LT_GEWL_like Location: 1782577-1782877 bp Feature: domain Description: LT_GEWL_like Location: 1 782577-1 782877 bp Feature: gene Location: 1783043-1783834 bp Feature: gene Location: 1841773-1842582 bp Feature: domain Description: Amj Location: 1841812-1842565 bp Feature: domain Description: Amj Location: 1 841 81 2-1 842565 bp Feature: gene Location: 1842690-1843178 bp Feature: domain Description: RNaseH_like Location: 1842735-1843158 bp Feature: domain Description: RNaseH_like Location: 1 842735-1 8431 58 bp Feature: gene Location: 1843627-1845039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843975-1844593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 843975-1 844593 bp Feature: domain Description: GIIM Note: maturase Location: 1844644-1844869 bp Feature: domain Description: GIIM Note: maturase Location: 1 844644-1 844869 bp Feature: gene Location: 1845103-1845984 bp Feature: domain Description: PAP2_like_3 Location: 1845208-1845577 bp Feature: domain Description: PAP2_like_3 Location: 1 845208-1 845577 bp Feature: gene Location: 1846133-1846879 bp Feature: domain Description: Yip1 Location: 1846163-1846451 bp Feature: domain Description: Yip1 Location: 1 8461 63-1 846451 bp Feature: domain Description: Yip1 Location: 1846553-1846796 bp Feature: domain Description: Yip1 Location: 1 846553-1 846796 bp Feature: gene Location: 1932747-1933670 bp Feature: domain Description: PRK13914 Location: 1932864-1933044 bp Feature: domain Description: PRK1 391 4 Location: 1 932864-1 933044 bp Feature: domain Description: PRK13914 Location: 1933086-1933272 bp Feature: domain Description: PRK1 391 4 Location: 1 933086-1 933272 bp Feature: domain Description: Spr Location: 1933299-1933656 bp Feature: domain Description: Spr Location: 1 933299-1 933656 bp Feature: gene Location: 1933790-1935613 bp Feature: domain Description: TypA Location: 1933805-1935602 bp Feature: domain Description: TypA Location: 1 933805-1 935602 bp Feature: gene Location: 1936064-1937476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936412-1937030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 93641 2-1 937030 bp Feature: domain Description: GIIM Note: maturase Location: 1937081-1937306 bp Feature: domain Description: GIIM Note: maturase Location: 1 937081 -1 937306 bp Feature: gene Location: 1937632-1937898 bp Feature: domain Description: CsoR-like_DUF156 Location: 1937653-1937884 bp Feature: domain Description: CsoR-like_DUF1 56 Location: 1 937653-1 937884 bp Feature: gene Location: 1937917-1939068 bp Feature: domain Description: NifS Location: 1937920-1939057 bp Feature: domain Description: NifS Location: 1 937920-1 939057 bp Feature: gene Location: 2424054-2426072 bp Feature: domain Description: LolE Location: 2424528-2424945 bp Feature: domain Description: LolE Location: 2424528-2424945 bp Feature: domain Description: LolE Location: 2425356-2426061 bp Feature: domain Description: LolE Location: 2425356-2426061 bp Feature: gene Location: 2426386-2427720 bp Feature: domain Description: PaaK Location: 2426428-2427712 bp Feature: domain Description: PaaK Location: 2426428-242771 2 bp Feature: gene Location: 2427886-2429298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2428234-2428852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2428234-2428852 bp Feature: domain Description: GIIM Note: maturase Location: 2428903-2429128 bp Feature: domain Description: GIIM Note: maturase Location: 2428903-24291 28 bp Feature: gene Location: 2430024-2430785 bp Feature: domain Description: nagB Location: 2430027-2430774 bp Feature: domain Description: nagB Location: 2430027-2430774 bp Feature: gene Location: 2431616-2431942 bp Feature: domain Description: HTH_24 Location: 2431673-2431793 bp Feature: domain Description: HTH_24 Location: 2431 673-2431 793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTS-II-BC-nag (TIGR01998), DUF820, RVT-GII, GIIM (pfam08388), Tar (COG0840), M42_Frv (cd05656), FrvX (COG1363), pyruv_ox_red (TIGR02176), Ferritin_CCC1_N (cd01044), Ferritin_CCC1_C (cd02431)
Med (COG1744), PurR (COG1609), MviM (COG0673), HTH_24 (pfam13412), NagC (COG1940), lipoamide_DH (TIGR01350), PRK01202 (glycine cleavage system protein GcvH), Adenine_glyco (pfam03352), PRK04180 (pyridoxal 5'-phosphate synthase lyase subunit PdxS), PdxT (COG0311)
LT_GEWL_like, Amj (pfam10997), RNaseH_like (pfam04308), PAP2_like_3 (cd03393), Yip1 (pfam04893), PRK13914 (invasion associated endopeptidase), Spr (COG0791), TypA (COG1217), CsoR-like_DUF156 (cl00846), NifS (COG1104)
LolE (COG4591), PaaK (COG1541), nagB (TIGR00502)