myRT

myRT report for GCA_000262545.1_ASM26254v1

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Seq: JH660660.1 Prevotella bivia DSM 20514 genomic scaffold Prebiscaffold_3, whole genome shotgun sequence (1982184 bp)
Overview 1 RT 1: 520263-531717 bp 2 RT 2: 536724-542751 bp 3 RT 3: 1266700-1272595 bp 4 RT 4: 1438996-1443155 bp Neighborhood of RT #1 [520263, 531719] PRK13351 Spc7 RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Neighborhood of RT #2 [536724, 542756] HTH_17 COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like 2am3keto_CoA Neighborhood of RT #3 [1266700, 1272595] TnpB_IS66 DDE_Tnp_IS66 RVT-GII Intron_maturas2 DUF1896 Neighborhood of RT #4 [1438996, 1443580] RVT_N RVT-GII GIIM AbiEii AbiEi_4 Feature: gene Location: 520263-522188 bp Feature: domain Description: PRK13351 Location: 520266-522120 bp Feature: domain Description: PRK1 3351 Location: 520266-5221 20 bp Feature: gene Location: 522846-523982 bp Feature: domain Description: Spc7 Location: 523593-523860 bp Feature: domain Description: Spc7 Location: 523593-523860 bp Feature: gene Location: 524113-525783 bp Feature: RT Description: RVT_N Location: 524167-524410 bp Feature: RT Description: RVT_N Location: 5241 67-52441 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524455-525103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524455-5251 03 bp Feature: domain Description: GIIM Note: maturase Location: 525157-525388 bp Feature: domain Description: GIIM Note: maturase Location: 5251 57-525388 bp Feature: gene Location: 526442-531130 bp Feature: domain Description: N6_Mtase Location: 526754-527357 bp Feature: domain Description: N6_Mtase Location: 526754-527357 bp Feature: domain Description: COG4646 Location: 528686-530747 bp Feature: domain Description: COG4646 Location: 528686-530747 bp Feature: gene Location: 531120-531719 bp Feature: domain Description: DUF1896 Location: 531297-531717 bp Feature: domain Description: DUF1 896 Location: 531 297-531 71 7 bp Feature: gene Location: 536724-537029 bp Feature: domain Description: HTH_17 Location: 536862-536991 bp Feature: domain Description: HTH_1 7 Location: 536862-536991 bp Feature: gene Location: 537107-537469 bp Feature: domain Description: COG3943 Location: 537146-537395 bp Feature: domain Description: COG3943 Location: 5371 46-537395 bp Feature: gene Location: 537683-539491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537947-538769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537947-538769 bp Feature: domain Description: Intron_maturas2 Location: 538895-539150 bp Feature: domain Description: Intron_maturas2 Location: 538895-5391 50 bp Feature: gene Location: 540042-541211 bp Feature: domain Description: Arm-DNA-bind_5 Location: 540072-540327 bp Feature: domain Description: Arm-DNA-bind_5 Location: 540072-540327 bp Feature: domain Description: Phage_int_SAM_5 Location: 540366-540687 bp Feature: domain Description: Phage_int_SAM_5 Location: 540366-540687 bp Feature: domain Description: INTN1_C_like Location: 540726-541194 bp Feature: domain Description: INTN1 _C_like Location: 540726-541 1 94 bp Feature: gene Location: 541569-542756 bp Feature: domain Description: 2am3keto_CoA Location: 541584-542751 bp Feature: domain Description: 2am3keto_CoA Location: 541 584-542751 bp Feature: gene Location: 1266700-1267044 bp Feature: domain Description: TnpB_IS66 Location: 1266736-1267012 bp Feature: domain Description: TnpB_IS66 Location: 1 266736-1 26701 2 bp Feature: gene Location: 1267108-1268682 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1267702-1268536 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 267702-1 268536 bp Feature: gene Location: 1269528-1271336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1269792-1270614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 269792-1 27061 4 bp Feature: domain Description: Intron_maturas2 Location: 1270725-1270995 bp Feature: domain Description: Intron_maturas2 Location: 1 270725-1 270995 bp Feature: gene Location: 1271571-1272035 bp Feature: domain Description: DUF1896 Location: 1271580-1272006 bp Feature: domain Description: DUF1 896 Location: 1 271 580-1 272006 bp Feature: gene Location: 1272176-1272595 bp Feature: gene Location: 1438996-1440666 bp Feature: RT Description: RVT_N Location: 1439050-1439293 bp Feature: RT Description: RVT_N Location: 1 439050-1 439293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439338-1439986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 439338-1 439986 bp Feature: domain Description: GIIM Note: maturase Location: 1440040-1440271 bp Feature: domain Description: GIIM Note: maturase Location: 1 440040-1 440271 bp Feature: gene Location: 1441975-1442982 bp Feature: domain Description: AbiEii Location: 1442113-1442941 bp Feature: domain Description: AbiEii Location: 1 4421 1 3-1 442941 bp Feature: gene Location: 1442975-1443580 bp Feature: domain Description: AbiEi_4 Location: 1443089-1443155 bp Feature: domain Description: AbiEi_4 Location: 1 443089-1 4431 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989), HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein )
Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), 2am3keto_CoA (TIGR01822), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), AbiEii (pfam08843), AbiEi_4 (pfam13338)