myRT

myRT report for GCA_000262735.1_ASM26273v1

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Seq: ADWW01000004.1 Bacillus methanolicus MGA3 contig_4, whole genome shotgun sequence (403214 bp)
Overview 1 RT 1: 5966-11042 bp Neighborhood of RT #1 [5966, 11068] M3B_PepF RVT-GII GIIM McsA ClpA YkvI Feature: gene Location: 5966-6499 bp Ori: EIJ79371.1 Feature: domain Description: M3B_PepF Location: 5969-6461 bp Feature: domain Description: M3B_PepF Location: 5969-6461 bp Feature: gene Location: 6960-7145 bp Feature: gene Location: 7087-8346 bp Ori: EIJ79373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7285-7903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7285-7903 bp Feature: domain Description: GIIM Note: maturase Location: 7951-8173 bp Feature: domain Description: GIIM Note: maturase Location: 7951 -81 73 bp Feature: gene Location: 8412-10574 bp Ori: EIJ79374.1 Feature: domain Description: McsA Location: 8415-8520 bp Feature: domain Description: McsA Location: 841 5-8520 bp Feature: domain Description: ClpA Location: 8658-10533 bp Feature: domain Description: ClpA Location: 8658-1 0533 bp Feature: gene Location: 10862-11068 bp Ori: EIJ79375.1 Feature: domain Description: YkvI Location: 10877-11042 bp Feature: domain Description: YkvI Location: 1 0877-1 1 042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M3B_PepF (cd09610), RVT-GII, GIIM (pfam08388), McsA (COG3880), ClpA (TIGR02639), YkvI (COG3949)

Seq: ADWW01000002.1 Bacillus methanolicus MGA3 contig_2, whole genome shotgun sequence (1268561 bp)
Overview 1 RT 1: 257759-261955 bp 2 RT 2: 929331-932987 bp 3 RT 3: 954986-958969 bp Neighborhood of RT #1 [257759, 261955] GT4_PimA-like RVT-GII GIIM Neighborhood of RT #2 [929331, 932995] QcrA DUF2487 RVT-GII GIIM PRK03636 Neighborhood of RT #3 [954986, 959004] YpzI RVT-GII GIIM PRK05437 Feature: gene Location: 257759-258901 bp Ori: EIJ82593.1 Feature: domain Description: GT4_PimA-like Location: 257768-258881 bp Feature: domain Description: GT4_PimA-like Location: 2 57768-2 58881 bp Feature: gene Location: 259372-259557 bp Feature: gene Location: 259499-260758 bp Ori: EIJ82595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259697-260315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59697-2 60315 bp Feature: domain Description: GIIM Note: maturase Location: 260363-260585 bp Feature: domain Description: GIIM Note: maturase Location: 2 60363-2 60585 bp Feature: gene Location: 260985-261401 bp Feature: gene Location: 261479-261955 bp Feature: gene Location: 929331-929771 bp Ori: EIJ83289.1 Feature: domain Description: QcrA Location: 929340-929733 bp Feature: domain Description: QcrA Location: 92 9340-92 9733 bp Feature: gene Location: 929979-930449 bp Ori: EIJ83290.1 Feature: domain Description: DUF2487 Location: 930006-930429 bp Feature: domain Description: DUF2 487 Location: 930006-93042 9 bp Feature: gene Location: 930599-931858 bp Ori: EIJ83291.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930797-931415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930797-931415 bp Feature: domain Description: GIIM Note: maturase Location: 931463-931685 bp Feature: domain Description: GIIM Note: maturase Location: 931463-931685 bp Feature: gene Location: 931800-931985 bp Feature: gene Location: 932447-932995 bp Ori: EIJ83293.1 Feature: domain Description: PRK03636 Location: 932459-932987 bp Feature: domain Description: PRK03636 Location: 932 459-932 987 bp Feature: gene Location: 954986-955594 bp Feature: gene Location: 955702-955845 bp Ori: EIJ83317.1 Feature: domain Description: YpzI Location: 955708-955822 bp Feature: domain Description: YpzI Location: 955708-95582 2 bp Feature: gene Location: 956103-957362 bp Ori: EIJ83318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956301-956919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956301-956919 bp Feature: domain Description: GIIM Note: maturase Location: 956967-957189 bp Feature: domain Description: GIIM Note: maturase Location: 956967-957189 bp Feature: gene Location: 957304-957489 bp Feature: gene Location: 957949-959004 bp Ori: EIJ83320.1 Feature: domain Description: PRK05437 Location: 957961-958969 bp Feature: domain Description: PRK05437 Location: 957961-958969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), RVT-GII, GIIM (pfam08388), QcrA (COG0723), DUF2487 (pfam10673), PRK03636 (hypothetical protein; Provisional), YpzI (pfam14140), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional)

Seq: ADWW01000001.1 Bacillus methanolicus MGA3 contig_1, whole genome shotgun sequence (756818 bp)
Overview 1 RT 1: 225488-230815 bp 2 RT 2: 499605-503953 bp 3 RT 3: 548305-554305 bp 4 RT 4: 739847-744073 bp 5 RT 5: 753629-756694 bp Neighborhood of RT #1 [225488, 230868] COG5652 RVT-GII spore_II_D MurA Neighborhood of RT #2 [499605, 503985] DUF2584 RVT-GII GIIM PRK09344 DUF393 Neighborhood of RT #3 [548305, 554322] GvpP RVT-GII GIIM FtsA PRK12595 Neighborhood of RT #4 [739847, 744078] RpmA RVT-GII GIIM SPOB_a SPOB_ab obgE Neighborhood of RT #5 [753629, 756818] Spore_YhcN_YlaJ PRK00110 RVT-GII Feature: gene Location: 225488-225940 bp Ori: EIJ83848.1 Feature: domain Description: COG5652 Location: 225545-225854 bp Feature: domain Description: COG5652 Location: 225545-225854 bp Feature: gene Location: 226376-226588 bp Feature: gene Location: 227817-228011 bp Ori: EIJ83850.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227823-227970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227823 -227970 bp Feature: gene Location: 228261-229292 bp Ori: EIJ83851.1 Feature: domain Description: spore_II_D Location: 228282-229254 bp Feature: domain Description: spore_II_D Location: 228282-229254 bp Feature: gene Location: 229558-230868 bp Ori: EIJ83852.1 Feature: domain Description: MurA Location: 229564-230815 bp Feature: domain Description: MurA Location: 229564-23 0815 bp Feature: gene Location: 499605-499847 bp Ori: EIJ84118.1 Feature: domain Description: DUF2584 Location: 499608-499845 bp Feature: domain Description: DUF2584 Location: 499608-499845 bp Feature: gene Location: 500350-500535 bp Feature: gene Location: 500477-501736 bp Ori: EIJ84120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500675-501293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500675-501293 bp Feature: domain Description: GIIM Note: maturase Location: 501341-501563 bp Feature: domain Description: GIIM Note: maturase Location: 5013 41-501563 bp Feature: gene Location: 501810-503396 bp Ori: EIJ84121.1 Feature: domain Description: PRK09344 Location: 501843-503382 bp Feature: domain Description: PRK093 44 Location: 501843 -503 3 82 bp Feature: gene Location: 503611-503985 bp Ori: EIJ84122.1 Feature: domain Description: DUF393 Location: 503629-503953 bp Feature: domain Description: DUF3 93 Location: 503 629-503 953 bp Feature: gene Location: 548305-548868 bp Ori: EIJ84165.1 Feature: domain Description: GvpP Location: 548368-548749 bp Feature: domain Description: GvpP Location: 5483 68-548749 bp Feature: gene Location: 549380-549565 bp Feature: gene Location: 549507-550766 bp Ori: EIJ84167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549705-550323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549705-5503 23 bp Feature: domain Description: GIIM Note: maturase Location: 550371-550593 bp Feature: domain Description: GIIM Note: maturase Location: 5503 71-550593 bp Feature: gene Location: 550840-553026 bp Ori: EIJ84168.1 Feature: domain Description: FtsA Location: 550858-552268 bp Feature: domain Description: FtsA Location: 550858-552268 bp Feature: gene Location: 553246-554322 bp Ori: EIJ84169.1 Feature: domain Description: PRK12595 Location: 553249-554305 bp Feature: domain Description: PRK12595 Location: 553 249-5543 05 bp Feature: gene Location: 739847-740137 bp Ori: EIJ84340.1 Gene: rpmA Feature: domain Description: RpmA Location: 739874-740129 bp Feature: domain Description: RpmA Location: 73 9874-740129 bp Feature: gene Location: 740609-740794 bp Feature: gene Location: 740736-741995 bp Ori: EIJ84342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740934-741552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74093 4-741552 bp Feature: domain Description: GIIM Note: maturase Location: 741600-741822 bp Feature: domain Description: GIIM Note: maturase Location: 741600-741822 bp Feature: gene Location: 742190-742726 bp Ori: EIJ84343.1 Feature: domain Description: SPOB_a Location: 742208-742361 bp Feature: domain Description: SPOB_a Location: 742208-7423 61 bp Feature: domain Description: SPOB_ab Location: 742373-742688 bp Feature: domain Description: SPOB_ab Location: 7423 73 -742688 bp Feature: gene Location: 742789-744078 bp Ori: EIJ84344.1 Gene: obgE Feature: domain Description: obgE Location: 742792-744073 bp Feature: domain Description: obgE Location: 742792-744073 bp Feature: gene Location: 753629-754396 bp Ori: EIJ84353.1 Feature: domain Description: Spore_YhcN_YlaJ Location: 753860-754364 bp Feature: domain Description: Spore_YhcN_YlaJ Location: 753 860-7543 64 bp Feature: gene Location: 754554-755282 bp Ori: EIJ84354.1 Feature: domain Description: PRK00110 Location: 754557-755274 bp Feature: domain Description: PRK00110 Location: 754557-755274 bp Feature: gene Location: 755797-756818 bp Ori: EIJ84355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756076-756694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756076-756694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5652 (VanZ-like family protein (function unknown) ), RVT-GII, spore_II_D (TIGR02870), MurA (COG0766), DUF2584 (pfam10763), GIIM (pfam08388), PRK09344 (phosphoenolpyruvate carboxykinase), DUF393 (pfam04134), GvpP (COG4980), FtsA (smart00842)
PRK12595 (bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed), RpmA (COG0211), SPOB_a (pfam14689), SPOB_ab (pfam14682), obgE (PRK12299), Spore_YhcN_YlaJ (pfam09580), PRK00110 (YebC/PmpR family DNA-binding transcriptional regulator)

Seq: ADWW01000003.1 Bacillus methanolicus MGA3 contig_3, whole genome shotgun sequence (547038 bp)
Overview 1 RT 1: 117272-121846 bp 2 RT 2: 290094-294019 bp Neighborhood of RT #1 [117272, 121911] DUF2971 HTH_GlnR-like RVT-GII GIIM PstA Neighborhood of RT #2 [290094, 294027] ARO8 DUF1801 RVT-GII GIIM COG4708 Feature: gene Location: 117272-118243 bp Ori: EIJ80859.1 Feature: domain Description: DUF2971 Location: 117680-118001 bp Feature: domain Description: DUF2971 Location: 117680-118001 bp Feature: gene Location: 118377-118715 bp Ori: EIJ80860.1 Feature: domain Description: HTH_GlnR-like Location: 118413-118665 bp Feature: domain Description: HTH_GlnR-like Location: 1184 13-118665 bp Feature: gene Location: 119097-120356 bp Ori: EIJ80861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119295-119913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119295-119913 bp Feature: domain Description: GIIM Note: maturase Location: 119961-120183 bp Feature: domain Description: GIIM Note: maturase Location: 119961-120183 bp Feature: gene Location: 120298-120483 bp Feature: gene Location: 120985-121911 bp Ori: EIJ80863.1 Feature: domain Description: PstA Location: 120994-121846 bp Feature: domain Description: PstA Location: 120994 -12184 6 bp Feature: gene Location: 290094-291011 bp Ori: EIJ81034.1 Feature: domain Description: ARO8 Location: 290238-291006 bp Feature: domain Description: ARO8 Location: 290238-291006 bp Feature: gene Location: 291167-291589 bp Ori: EIJ81035.1 Feature: domain Description: DUF1801 Location: 291242-291554 bp Feature: domain Description: DUF1801 Location: 29124 2-291554 bp Feature: gene Location: 291982-292929 bp Ori: EIJ81036.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292051-292486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292051-2924 86 bp Feature: domain Description: GIIM Note: maturase Location: 292534-292756 bp Feature: domain Description: GIIM Note: maturase Location: 292534 -292756 bp Feature: gene Location: 292814-292975 bp Feature: gene Location: 293542-294027 bp Ori: EIJ81038.1 Feature: domain Description: COG4708 Location: 293545-294019 bp Feature: domain Description: COG4 708 Location: 29354 5-294 019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), HTH_GlnR-like (cd01105), RVT-GII, GIIM (pfam08388), PstA (COG0581), ARO8 (COG1167), DUF1801 (pfam08818), COG4708 (Uncharacterized membrane protein )

Seq: ADWW01000008.1 Bacillus methanolicus MGA3 contig_8, whole genome shotgun sequence (31167 bp)
Overview 1 RT 1: 27327-30994 bp Neighborhood of RT #1 [27327, 31167] cysJ HTH_1 PBP2_CysL_like RVT-GII GIIM Feature: gene Location: 27327-29147 bp Ori: EIJ77694.1 Feature: domain Description: cysJ Location: 27345-29145 bp Feature: domain Description: cysJ Location: 27345 -29145 bp Feature: gene Location: 29421-30329 bp Ori: EIJ77695.1 Feature: domain Description: HTH_1 Location: 29433-29607 bp Feature: domain Description: HTH_1 Location: 29433-29607 bp Feature: domain Description: PBP2_CysL_like Location: 29700-30285 bp Feature: domain Description: PBP2_CysL_like Location: 29700-30285 bp Feature: gene Location: 30460-31167 bp Ori: EIJ77696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30466-30724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30466-30724 bp Feature: domain Description: GIIM Note: maturase Location: 30772-30994 bp Feature: domain Description: GIIM Note: maturase Location: 30772-30994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysJ (TIGR01931), HTH_1 (pfam00126), PBP2_CysL_like (cd08420), RVT-GII, GIIM (pfam08388)

Seq: ADWW01000006.1 Bacillus methanolicus MGA3 contig_6, whole genome shotgun sequence (59422 bp)
Overview 1 RT 1: 53071-59421 bp Neighborhood of RT #1 [53071, 59422] RVT-UG19 TIR_2 COG3666 DDE_Tnp_1 Feature: gene Location: 53071-53517 bp Feature: gene Location: 55034-55213 bp Feature: gene Location: 55422-58124 bp Ori: EIJ77779.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 55797-56274 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 55797-56 274 bp Feature: domain Description: TIR_2 Location: 57687-58020 bp Feature: domain Description: TIR_2 Location: 576 87-58020 bp Feature: gene Location: 58398-59422 bp Ori: EIJ77780.1 Feature: domain Description: COG3666 Location: 58425-58890 bp Feature: domain Description: COG36 6 6 Location: 58425-58890 bp Feature: domain Description: DDE_Tnp_1 Location: 59184-59421 bp Feature: domain Description: DDE_Tnp_1 Location: 59184-59421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, TIR_2 (pfam13676), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609)