myRT

myRT report for GCA_000263295.1_SE-SS209

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Seq: CAGQ01000013.1 Salmonella enterica subsp. enterica serovar Senftenberg str. SS209 WGS project CAGQ00000000 data, contig 00022, whole genome shotgun sequence (4366 bp)
Overview 1 RT 1: 142-1090 bp Neighborhood of RT #1 [142, 1101] RVT-GII DUF903 Feature: gene Location: 142-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-673 bp Feature: gene Location: 740-874 bp Feature: gene Location: 874-1101 bp Feature: domain Description: DUF903 Location: 952-1090 bp Feature: domain Description: DUF903 Location: 952-1 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF903 (pfam06004)

Seq: CAGQ01000082.1 Salmonella enterica subsp. enterica serovar Senftenberg str. SS209 WGS project CAGQ00000000 data, contig 00122, whole genome shotgun sequence (78350 bp)
Overview 1 RT 1: 44741-50114 bp Neighborhood of RT #1 [44741, 50185] PRK10216 PRK10473 RVT-Retrons INT_P4_C Feature: gene Location: 44741-45700 bp Feature: domain Description: PRK10216 Location: 44744-45695 bp Feature: domain Description: PRK102 16 Location: 44744-45695 bp Feature: gene Location: 45669-46856 bp Feature: domain Description: PRK10473 Location: 45672-46848 bp Feature: domain Description: PRK10473 Location: 45672 -46848 bp Feature: gene Location: 47750-48685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47861-48446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47861-48446 bp Feature: gene Location: 49328-49648 bp Feature: gene Location: 49973-50185 bp Feature: domain Description: INT_P4_C Location: 49979-50114 bp Feature: domain Description: INT_P4_C Location: 49979-50114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801)