myRT

myRT report for GCA_000263395.1_ASM26339v1

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Seq: AJXE01000010.1 Pseudomonas stutzeri TS44 Contig00010, whole genome shotgun sequence (122433 bp)
Overview 1 RT 1: 5112-10730 bp Neighborhood of RT #1 [5112, 10741] HTH_ARSR MDR7 RVT-Retrons Trypsin_2 CoiA SMODS AGS_C Feature: gene Location: 5112-5417 bp Feature: domain Description: HTH_ARSR Location: 5241-5382 bp Feature: domain Description: HTH_ARSR Location: 5241 -5382 bp Feature: gene Location: 5473-6483 bp Feature: domain Description: MDR7 Location: 5488-6478 bp Feature: domain Description: MDR7 Location: 5488-6478 bp Feature: gene Location: 6630-8396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6777-7380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6777-7380 bp Feature: domain Description: Trypsin_2 Location: 7773-8193 bp Feature: domain Description: Trypsin_2 Location: 7773-81 93 bp Feature: gene Location: 8553-9239 bp Feature: domain Description: CoiA Location: 8607-8703 bp Feature: domain Description: CoiA Location: 8607-8703 bp Feature: gene Location: 9632-10741 bp Feature: domain Description: SMODS Location: 9638-9911 bp Feature: domain Description: SMODS Location: 9638-991 1 bp Feature: domain Description: AGS_C Location: 10349-10730 bp Feature: domain Description: AGS_C Location: 1 0349-1 0730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), MDR7 (cd08276), RVT-Retrons, Trypsin_2 (pfam13365), CoiA (pfam06054), SMODS (pfam18144), AGS_C (pfam18134)

Seq: AJXE01000065.1 Pseudomonas stutzeri TS44 Contig00065, whole genome shotgun sequence (1850 bp)
Overview 1 RT 1: 64-1234 bp Neighborhood of RT #1 [64, 1332] RVT-GII GIIM Feature: gene Location: 64-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 77-934 bp Feature: domain Description: GIIM Note: maturase Location: 1012-1234 bp Feature: domain Description: GIIM Note: maturase Location: 1012 -12 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJXE01000028.1 Pseudomonas stutzeri TS44 Contig00028, whole genome shotgun sequence (42942 bp)
Overview 1 RT 1: 35621-42910 bp Neighborhood of RT #1 [35621, 42942] COG0610 DUF45 RVT-Retrons DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 35621-38905 bp Feature: domain Description: COG0610 Location: 35648-38729 bp Feature: domain Description: COG0610 Location: 3 5648-3 8729 bp Feature: gene Location: 38919-39629 bp Feature: domain Description: DUF45 Location: 38985-39606 bp Feature: domain Description: DUF45 Location: 3 8985-3 9606 bp Feature: gene Location: 40846-41766 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40924-41479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40924-41479 bp Feature: gene Location: 41741-41854 bp Feature: gene Location: 41884-42942 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41920-42775 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41920-42775 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42796-42910 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42796-42910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-Retrons, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: AJXE01000013.1 Pseudomonas stutzeri TS44 Contig00013, whole genome shotgun sequence (120586 bp)
Overview 1 RT 1: 71831-79562 bp Neighborhood of RT #1 [71831, 79564] AroG2 PRK00529 RVT-GII YkfC HNHc efp_adjacent_2 COG3380 Feature: gene Location: 71831-73180 bp Feature: domain Description: AroG2 Location: 71834-73166 bp Feature: domain Description: AroG2 Location: 71834 -73166 bp Feature: gene Location: 73280-73846 bp Feature: domain Description: PRK00529 Location: 73283-73841 bp Feature: domain Description: PRK00529 Location: 73283-7384 1 bp Feature: gene Location: 74008-75333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74011-74599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 011-74 599 bp Feature: domain Description: YkfC Location: 74821-74926 bp Feature: domain Description: YkfC Location: 74 821-74 926 bp Feature: domain Description: HNHc Note: nucleases Location: 75133-75289 bp Feature: domain Description: HNHc Note: nucleases Location: 75133-75289 bp Feature: gene Location: 76812-77951 bp Feature: domain Description: efp_adjacent_2 Location: 76833-77937 bp Feature: domain Description: efp_adjacent_2 Location: 76833-77937 bp Feature: gene Location: 78578-79564 bp Feature: domain Description: COG3380 Location: 78596-79562 bp Feature: domain Description: COG3380 Location: 78596-79562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AroG2 (COG3200), PRK00529 (elongation factor P; Validated), RVT-GII, YkfC (COG3344), HNHc (smart00507), efp_adjacent_2, COG3380 (Predicted NAD/FAD-dependent oxidoreductase )

Seq: AJXE01000009.1 Pseudomonas stutzeri TS44 Contig00009, whole genome shotgun sequence (130852 bp)
Overview 1 RT 1: 1-4181 bp Neighborhood of RT #1 [1, 4186] RVT_N RVT-GII GIIM groEL groES Feature: gene Location: 1-1191 bp Feature: RT Description: RVT_N Location: 55-295 bp Feature: RT Description: RVT_N Location: 5 5 -295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-988 bp Feature: domain Description: GIIM Note: maturase Location: 1039-1189 bp Feature: domain Description: GIIM Note: maturase Location: 1039-1189 bp Feature: gene Location: 2205-3845 bp Feature: domain Description: groEL Location: 2211-3831 bp Feature: domain Description: groEL Location: 2211-3831 bp Feature: gene Location: 3893-4186 bp Feature: domain Description: groES Location: 3896-4181 bp Feature: domain Description: groES Location: 3896-4181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), groEL (PRK12852), groES (PRK14533)