myRT

myRT report for GCA_000263855.1_ASM26385v1

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Seq: AJWX01000032.1 Pseudomonas sp. M47T1 contig032, whole genome shotgun sequence (71745 bp)
Overview 1 RT 1: 40176-42735 bp Neighborhood of RT #1 [40176, 42743] RVT-GII GIIM DDE_Tnp_IS66_C PrpB Feature: gene Location: 40176-41447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40179-40755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 79-40755 bp Feature: domain Description: GIIM Note: maturase Location: 40809-41040 bp Feature: domain Description: GIIM Note: maturase Location: 40809-41 040 bp Feature: gene Location: 41639-41773 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41645-41756 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 645-41 756 bp Feature: gene Location: 41892-42743 bp Feature: domain Description: PrpB Location: 41901-42735 bp Feature: domain Description: PrpB Location: 41 901 -42735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PrpB (COG2513)

Seq: AJWX01000011.1 Pseudomonas sp. M47T1 contig011, whole genome shotgun sequence (175892 bp)
Overview 1 RT 1: 162286-165562 bp Neighborhood of RT #1 [162286, 165678] DUF1566 Avd_like RVT-DGRs HNH_3 Feature: gene Location: 162286-162900 bp Feature: domain Description: DUF1566 Location: 162517-162883 bp Feature: domain Description: DUF1566 Location: 162 517-162 883 bp Feature: gene Location: 162958-163311 bp Feature: domain Description: Avd_like Location: 162985-163291 bp Feature: domain Description: Avd_like Location: 162 985-1632 91 bp Feature: gene Location: 163612-164700 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 163771-164521 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 163771-16452 1 bp Feature: gene Location: 164747-164959 bp Feature: gene Location: 164956-165678 bp Feature: domain Description: HNH_3 Location: 165430-165562 bp Feature: domain Description: HNH_3 Location: 165430-165562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, HNH_3 (pfam13392)

Seq: AJWX01000014.1 Pseudomonas sp. M47T1 contig014, whole genome shotgun sequence (167337 bp)
Overview 1 RT 1: 36553-40746 bp Neighborhood of RT #1 [36553, 40760] VagC IS5 RVT-GII GIIM xerC Feature: gene Location: 36553-36783 bp Feature: domain Description: VagC Location: 36562-36745 bp Feature: domain Description: VagC Location: 3 6562-3 6745 bp Feature: gene Location: 37690-38076 bp Feature: domain Description: IS5 Location: 37699-38050 bp Feature: domain Description: IS5 Location: 3 7699-3 8050 bp Feature: gene Location: 38231-39076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38234-38693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 823 4-3 8693 bp Feature: domain Description: GIIM Note: maturase Location: 38771-38993 bp Feature: domain Description: GIIM Note: maturase Location: 3 8771-3 8993 bp Feature: gene Location: 39388-39990 bp Feature: gene Location: 40086-40760 bp Feature: domain Description: xerC Location: 40110-40746 bp Feature: domain Description: xerC Location: 40110-40746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VagC (COG4456), IS5 (COG3039), RVT-GII, GIIM (pfam08388), xerC (PRK01287)