myRT

myRT report for GCA_000264155.1_ASM26415v1

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Seq: AJWT01000022.1 Escherichia coli 75 contig00029, whole genome shotgun sequence (7953 bp)
Overview 1 RT 1: 3338-7953 bp Neighborhood of RT #1 [3338, 7953] prfC PRK10597 RVT-Retrons TIR_2 Feature: gene Location: 3338-4924 bp Feature: domain Description: prfC Location: 3356-4922 bp Feature: domain Description: prfC Location: 3356-4922 bp Feature: gene Location: 5144-5404 bp Feature: domain Description: PRK10597 Location: 5147-5387 bp Feature: domain Description: PRK1 0597 Location: 51 47-5387 bp Feature: gene Location: 5762-7366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6053-6644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6053-6644 bp Feature: domain Description: TIR_2 Location: 6971-7304 bp Feature: domain Description: TIR_2 Location: 6971 -7304 bp Feature: gene Location: 7811-7953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: AJWT01000218.1 Escherichia coli 75 contig00248, whole genome shotgun sequence (27361 bp)
Overview 1 RT 1: 1206-4908 bp Neighborhood of RT #1 [1206, 5018] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Feature: gene Location: 1206-1508 bp Feature: domain Description: InsE Location: 1215-1497 bp Feature: domain Description: InsE Location: 12 15-1497 bp Feature: gene Location: 1535-1960 bp Feature: domain Description: PHA02517 Location: 1559-1895 bp Feature: domain Description: PHA02 517 Location: 1559-1895 bp Feature: gene Location: 2552-4075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825-3557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 5-3557 bp Feature: domain Description: GIIM Note: maturase Location: 3632-3830 bp Feature: domain Description: GIIM Note: maturase Location: 3632 -3830 bp Feature: gene Location: 4438-4644 bp Feature: domain Description: PHA02517 Location: 4441-4633 bp Feature: domain Description: PHA02 517 Location: 4441-4633 bp Feature: gene Location: 4758-5018 bp Feature: domain Description: Ogr_Delta Location: 4767-4908 bp Feature: domain Description: Ogr_Delta Location: 4767-4908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606)

Seq: AJWT01000034.1 Escherichia coli 75 contig00041, whole genome shotgun sequence (17661 bp)
Overview 1 RT 1: 5135-9572 bp Neighborhood of RT #1 [5135, 9572] PtsN LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 5135-5578 bp Feature: domain Description: PtsN Location: 5138-5573 bp Feature: domain Description: PtsN Location: 513 8-5573 bp Feature: gene Location: 5849-6880 bp Feature: domain Description: LacI Location: 5891-6026 bp Feature: domain Description: LacI Location: 5891-6026 bp Feature: domain Description: PBP1_GntR Location: 6065-6875 bp Feature: domain Description: PBP1_GntR Location: 6065-6875 bp Feature: gene Location: 7605-8258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7608-8016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7608-8016 bp Feature: domain Description: GIIM Note: maturase Location: 8064-8256 bp Feature: domain Description: GIIM Note: maturase Location: 8064-8256 bp Feature: gene Location: 8231-8665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8423-8639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8423 -863 9 bp Feature: gene Location: 9244-9336 bp Feature: gene Location: 9429-9572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PtsN (COG1762), LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)