myRT

myRT report for GCA_000264195.1_ASM26419v1

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Seq: AJWP01000009.1 Escherichia coli KD2 contig00010, whole genome shotgun sequence (11031 bp)
Overview 1 RT 1: 4340-8938 bp Neighborhood of RT #1 [4340, 8964] DUF5339 Asparaginase_2 RVT-GII DcuC Feature: gene Location: 4340-4618 bp Ori: EIL57583.1 Feature: domain Description: DUF5339 Location: 4403-4604 bp Feature: domain Description: DUF5339 Location: 4403-4604 bp Feature: gene Location: 4956-5987 bp Ori: EIL57584.1 Feature: domain Description: Asparaginase_2 Location: 5046-5979 bp Feature: domain Description: Asparaginase_2 Location: 5046-5979 bp Feature: gene Location: 6511-6957 bp Ori: EIL57585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6817-6919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681 7-691 9 bp Feature: gene Location: 7323-7550 bp Feature: gene Location: 7603-8964 bp Ori: EIL57587.1 Feature: domain Description: DcuC Location: 7606-8938 bp Feature: domain Description: DcuC Location: 7606-8938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: AJWP01000108.1 Escherichia coli KD2 contig00116, whole genome shotgun sequence (87995 bp)
Overview 1 RT 1: 21142-26437 bp Neighborhood of RT #1 [21142, 26442] RVT-Retrons Q Feature: gene Location: 21142-22980 bp Feature: gene Location: 23033-23170 bp Feature: gene Location: 23450-24676 bp Ori: EIL53920.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23636-24218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3636-2 42 18 bp Feature: gene Location: 24673-25380 bp Feature: gene Location: 25423-26442 bp Ori: EIL53922.1 Feature: domain Description: Q Location: 25426-26437 bp Feature: domain Description: Q Location: 2 542 6-2 6437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536)

Seq: AJWP01000045.1 Escherichia coli KD2 contig00047, whole genome shotgun sequence (50093 bp)
Overview 1 RT 1: 371-6402 bp Neighborhood of RT #1 [371, 6402] AbiEii AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 371-1291 bp Ori: EIL56125.1 Feature: domain Description: AbiEii Location: 413-1154 bp Feature: domain Description: AbiEii Location: 413 -1154 bp Feature: gene Location: 1278-1835 bp Ori: EIL56126.1 Feature: domain Description: AbiEi_3 Location: 1338-1794 bp Feature: domain Description: AbiEi_3 Location: 13 3 8-1794 bp Feature: gene Location: 2376-5585 bp Ori: EIL56127.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2904-3393 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2904-3 3 93 bp Feature: domain Description: nitrilase Location: 4899-5496 bp Feature: domain Description: nitrilase Location: 4899-5496 bp Feature: gene Location: 5746-5886 bp Ori: EIL56128.1 Feature: domain Description: Phage_ASH Location: 5773-5866 bp Feature: domain Description: Phage_ASH Location: 5773 -5866 bp Feature: gene Location: 5932-6402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)