myRT

myRT report for GCA_000264375.1_Rh18863

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Seq: AJXW01000006.1 Rhodanobacter thiooxydans LCS2 contig006, whole genome shotgun sequence (64431 bp)
Overview 1 RT 1: 10232-17875 bp Neighborhood of RT #1 [10232, 17922] TrmB FecR RVT_N RVT-GII GIIM HNHc COG4067 PRK10446 Feature: gene Location: 10232-10933 bp Feature: domain Description: TrmB Location: 10271-10928 bp Feature: domain Description: TrmB Location: 1 0271 -1 0928 bp Feature: gene Location: 11005-13299 bp Feature: domain Description: FecR Location: 11242-11530 bp Feature: domain Description: FecR Location: 1 1 242-1 1 530 bp Feature: gene Location: 14717-16342 bp Feature: RT Description: RVT_N Location: 14768-15011 bp Feature: RT Description: RVT_N Location: 1 4768-1 501 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15056-15680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5056-1 5680 bp Feature: domain Description: GIIM Note: maturase Location: 15734-15965 bp Feature: domain Description: GIIM Note: maturase Location: 1 5734-1 5965 bp Feature: domain Description: HNHc Note: nucleases Location: 16166-16322 bp Feature: domain Description: HNHc Note: nucleases Location: 1 61 66-1 6322 bp Feature: gene Location: 16527-16994 bp Feature: domain Description: COG4067 Location: 16548-16962 bp Feature: domain Description: COG4067 Location: 1 6548-1 6962 bp Feature: gene Location: 17002-17922 bp Feature: domain Description: PRK10446 Location: 17005-17875 bp Feature: domain Description: PRK1 0446 Location: 1 7005-1 7875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmB (pfam01978), FecR (pfam04773), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4067 (Uncharacterized conserved protein ), PRK10446 (30S ribosomal protein S6--L-glutamate ligase)

Seq: AJXW01000043.1 Rhodanobacter thiooxydans LCS2 contig043, whole genome shotgun sequence (341428 bp)
Overview 1 RT 1: 30787-35170 bp Neighborhood of RT #1 [30787, 35199] Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 30787-32547 bp Feature: domain Description: Dcm Location: 30868-32506 bp Feature: domain Description: Dcm Location: 30868-32 506 bp Feature: gene Location: 32540-32872 bp Feature: gene Location: 32865-34217 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33219-33966 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 332 19-33966 bp Feature: gene Location: 34238-34669 bp Feature: domain Description: Avd_like Location: 34262-34574 bp Feature: domain Description: Avd_like Location: 342 62 -34574 bp Feature: gene Location: 34696-35199 bp Feature: domain Description: DUF1566 Location: 34834-35170 bp Feature: domain Description: DUF1566 Location: 34834-35170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)