myRT

myRT report for GCA_000268025.1_ASM26802v1

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Seq: AKMZ01000062.1 Shigella flexneri K-404 gssK404.contig.61, whole genome shotgun sequence (17831 bp)
Overview 1 RT 1: 497-4297 bp 2 RT 2: 12941-15418 bp Neighborhood of RT #1 [497, 4302] PAP2_acid_phosphatase Tra5 RVT-GII ushA Neighborhood of RT #2 [12941, 15546] PHA02517 PHA02517 RVT-GII Y2_Tnp Feature: gene Location: 497-1189 bp Ori: EIQ25838.1 Feature: domain Description: PAP2_acid_phosphatase Location: 509-1145 bp Feature: domain Description: PAP2_acid_phosphatase Location: 509-1 1 45 bp Feature: gene Location: 1666-1866 bp Ori: EIQ25839.1 Feature: domain Description: Tra5 Location: 1675-1849 bp Feature: domain Description: Tra5 Location: 1 675-1 849 bp Feature: gene Location: 2131-2682 bp Ori: EIQ25840.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 79-2674 bp Feature: gene Location: 3413-3598 bp Feature: gene Location: 3772-4302 bp Ori: EIQ25842.1 Feature: domain Description: ushA Location: 3775-4297 bp Feature: domain Description: ushA Location: 3775-4297 bp Feature: gene Location: 12941-13504 bp Ori: EIQ25851.1 Feature: domain Description: PHA02517 Location: 13001-13307 bp Feature: domain Description: PHA0251 7 Location: 1 3001 -1 3307 bp Feature: gene Location: 13477-13719 bp Ori: EIQ25852.1 Feature: domain Description: PHA02517 Location: 13513-13675 bp Feature: domain Description: PHA0251 7 Location: 1 351 3-1 3675 bp Feature: gene Location: 13866-14105 bp Ori: EIQ25853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13872-14079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3872-1 4079 bp Feature: gene Location: 14825-15190 bp Feature: gene Location: 15145-15546 bp Ori: EIQ25855.1 Feature: domain Description: Y2_Tnp Location: 15241-15418 bp Feature: domain Description: Y2_Tnp Location: 1 5241 -1 541 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed), Y2_Tnp (pfam04986)

Seq: AKMZ01000078.1 Shigella flexneri K-404 gssK404.contig.77, whole genome shotgun sequence (117289 bp)
Overview 1 RT 1: 113450-116838 bp Neighborhood of RT #1 [113450, 116915] PHA02517 RVT-GII GIIM YkfC PHA02517 Feature: gene Location: 113450-113812 bp Feature: gene Location: 113809-114225 bp Ori: EIQ23405.1 Feature: domain Description: PHA02517 Location: 113812-114214 bp Feature: domain Description: PHA02 517 Location: 113812 -1142 14 bp Feature: gene Location: 114378-115211 bp Ori: EIQ23406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114384-114693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114384-114693 bp Feature: domain Description: GIIM Note: maturase Location: 114768-114987 bp Feature: domain Description: GIIM Note: maturase Location: 114768-114987 bp Feature: gene Location: 115732-115899 bp Ori: EIQ23407.1 Feature: domain Description: YkfC Location: 115741-115882 bp Feature: domain Description: YkfC Location: 115741-115882 bp Feature: gene Location: 116595-116915 bp Ori: EIQ23408.1 Feature: domain Description: PHA02517 Location: 116619-116838 bp Feature: domain Description: PHA02 517 Location: 116619-116838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YkfC (COG3344)

Seq: AKMZ01000060.1 Shigella flexneri K-404 gssK404.contig.59, whole genome shotgun sequence (19437 bp)
Overview 1 RT 1: 1-2475 bp 2 RT 2: 17112-19214 bp Neighborhood of RT #1 [1, 2540] GIIM RVT-GII YkfC PHA02517 Neighborhood of RT #2 [17112, 19437] PHA02517 YkfC RVT-GII GIIM Feature: gene Location: 1-386 bp Ori: EIQ25970.1 Feature: domain Description: GIIM Note: maturase Location: 7-163 bp Feature: domain Description: GIIM Note: maturase Location: 7-163 bp Feature: gene Location: 428-835 bp Ori: EIQ25971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 4-73 1 bp Feature: gene Location: 1317-1523 bp Ori: EIQ25972.1 Feature: domain Description: YkfC Location: 1326-1491 bp Feature: domain Description: YkfC Location: 13 26-1491 bp Feature: gene Location: 2115-2540 bp Ori: EIQ25973.1 Feature: domain Description: PHA02517 Location: 2139-2475 bp Feature: domain Description: PHA02517 Location: 213 9-2475 bp Feature: gene Location: 17112-17324 bp Ori: EIQ25993.1 Feature: domain Description: PHA02517 Location: 17115-17259 bp Feature: domain Description: PHA02517 Location: 17115-17259 bp Feature: gene Location: 17914-18192 bp Ori: EIQ25994.1 Feature: domain Description: YkfC Location: 17923-18166 bp Feature: domain Description: YkfC Location: 17923 -18166 bp Feature: gene Location: 18605-19437 bp Ori: EIQ25995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18611-18920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18611-18920 bp Feature: domain Description: GIIM Note: maturase Location: 18995-19214 bp Feature: domain Description: GIIM Note: maturase Location: 18995-19214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, YkfC (COG3344), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AKMZ01000059.1 Shigella flexneri K-404 gssK404.contig.58, whole genome shotgun sequence (14122 bp)
Overview 1 RT 1: 10135-14035 bp Neighborhood of RT #1 [10135, 14100] INT_P4_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10135-10884 bp Ori: EIQ26445.1 Feature: domain Description: INT_P4_C Location: 10240-10822 bp Feature: domain Description: INT_P4 _C Location: 1024 0-10822 bp Feature: gene Location: 10991-11407 bp Ori: EIQ26446.1 Feature: domain Description: PHA02517 Location: 10994-11396 bp Feature: domain Description: PHA02517 Location: 10994 -11396 bp Feature: gene Location: 11560-13068 bp Ori: EIQ26447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11818-12550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11818-12550 bp Feature: domain Description: GIIM Note: maturase Location: 12625-12823 bp Feature: domain Description: GIIM Note: maturase Location: 12625-12823 bp Feature: gene Location: 13675-14100 bp Ori: EIQ26448.1 Feature: domain Description: PHA02517 Location: 13699-14035 bp Feature: domain Description: PHA02517 Location: 13699-14 035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AKMZ01000035.1 Shigella flexneri K-404 gssK404.contig.34, whole genome shotgun sequence (17878 bp)
Overview 1 RT 1: 3536-7079 bp Neighborhood of RT #1 [3536, 7081] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3536-3673 bp Feature: gene Location: 3657-4103 bp Ori: EIQ30505.1 Feature: domain Description: PHA02517 Location: 3660-4101 bp Feature: domain Description: PHA025 17 Location: 3660-4101 bp Feature: gene Location: 4220-5728 bp Ori: EIQ30506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4478-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4478-5 210 bp Feature: domain Description: GIIM Note: maturase Location: 5285-5483 bp Feature: domain Description: GIIM Note: maturase Location: 5 285 -5 483 bp Feature: gene Location: 6364-6570 bp Ori: EIQ30507.1 Feature: domain Description: PHA02517 Location: 6367-6550 bp Feature: domain Description: PHA025 17 Location: 6367-65 5 0 bp Feature: gene Location: 6806-7081 bp Ori: EIQ30508.1 Feature: domain Description: InsE Location: 6848-7079 bp Feature: domain Description: InsE Location: 6848-7079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: AKMZ01000034.1 Shigella flexneri K-404 gssK404.contig.33, whole genome shotgun sequence (4111 bp)
Overview 1 RT 1: 387-4024 bp Neighborhood of RT #1 [387, 4089] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 387-890 bp Ori: EIQ30534.1 Feature: domain Description: DDE_Tnp_IS66 Location: 399-735 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 399-735 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 759-867 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 759-86 7 bp Feature: gene Location: 863-1432 bp Ori: EIQ30535.1 Feature: domain Description: PHA02517 Location: 866-1271 bp Feature: domain Description: PHA02517 Location: 86 6 -1271 bp Feature: gene Location: 1549-3057 bp Ori: EIQ30536.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1807-2539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1807-2539 bp Feature: domain Description: GIIM Note: maturase Location: 2614-2812 bp Feature: domain Description: GIIM Note: maturase Location: 26 14-2812 bp Feature: gene Location: 3664-4089 bp Ori: EIQ30537.1 Feature: domain Description: PHA02517 Location: 3688-4024 bp Feature: domain Description: PHA02517 Location: 36 88-4024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AKMZ01000079.1 Shigella flexneri K-404 gssK404.contig.78, whole genome shotgun sequence (205413 bp)
Overview 1 RT 1: 1-3311 bp 2 RT 2: 121107-125535 bp Neighborhood of RT #1 [1, 3311] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [121107, 125537] Peptidase_S6 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-112 bp Ori: EIQ23037.1 Feature: domain Description: PHA02517 Location: 4-112 bp Feature: domain Description: PHA02517 Location: 4-112 bp Feature: gene Location: 297-1736 bp Ori: EIQ23038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-1287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-1287 bp Feature: domain Description: GIIM Note: maturase Location: 1362-1560 bp Feature: domain Description: GIIM Note: maturase Location: 1362-1560 bp Feature: gene Location: 2343-2768 bp Ori: EIQ23039.1 Feature: domain Description: PHA02517 Location: 2367-2703 bp Feature: domain Description: PHA02517 Location: 2367 -27 03 bp Feature: gene Location: 3165-3311 bp Feature: gene Location: 121107-121940 bp Ori: EIQ23164.1 Feature: domain Description: Peptidase_S6 Location: 121260-121929 bp Feature: domain Description: Peptidase_S6 Location: 121260-121929 bp Feature: gene Location: 122105-122476 bp Ori: EIQ23165.1 Feature: domain Description: PHA02517 Location: 122108-122474 bp Feature: domain Description: PHA02517 Location: 122108-12247 4 bp Feature: gene Location: 122668-124176 bp Ori: EIQ23166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122926-123658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122926-123658 bp Feature: domain Description: GIIM Note: maturase Location: 123733-123931 bp Feature: domain Description: GIIM Note: maturase Location: 1237 33-123931 bp Feature: gene Location: 124783-125262 bp Ori: EIQ23167.1 Feature: domain Description: PHA02517 Location: 124843-125197 bp Feature: domain Description: PHA02517 Location: 124843-125197 bp Feature: gene Location: 125262-125537 bp Ori: EIQ23168.1 Feature: domain Description: InsE Location: 125283-125535 bp Feature: domain Description: InsE Location: 125283-125535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), InsE (COG2963)

Seq: AKMZ01000046.1 Shigella flexneri K-404 gssK404.contig.45, whole genome shotgun sequence (4985 bp)
Overview 1 RT 1: 48-4295 bp Neighborhood of RT #1 [48, 4333] PHA02517 PHA02517 RVT-GII GIIM RVT-GII Feature: gene Location: 48-500 bp Ori: EIQ28501.1 Feature: domain Description: PHA02517 Location: 63-276 bp Feature: domain Description: PHA02517 Location: 63-276 bp Feature: gene Location: 2255-2671 bp Ori: EIQ28502.1 Feature: domain Description: PHA02517 Location: 2258-2660 bp Feature: domain Description: PHA02517 Location: 2258 -2660 bp Feature: gene Location: 2824-3519 bp Ori: EIQ28503.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830-3001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 30-3001 bp Feature: domain Description: GIIM Note: maturase Location: 3076-3295 bp Feature: domain Description: GIIM Note: maturase Location: 3076-3295 bp Feature: gene Location: 3578-4333 bp Ori: EIQ28504.1 Gene: ykfC Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3836-4295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 36-4295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)