myRT

myRT report for GCA_000268125.1_ASM26812v1

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Seq: AKNH01000061.1 Escherichia coli EPECa12 EPECa12.contig.60, whole genome shotgun sequence (158734 bp)
Overview 1 RT 1: 75789-79671 bp Neighborhood of RT #1 [75789, 79676] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 75789-76247 bp Ori: EIQ59815.1 Gene: dut Feature: domain Description: dut Location: 75795-76242 bp Feature: domain Description: dut Location: 75795-76242 bp Feature: gene Location: 76354-76950 bp Ori: EIQ59816.1 Gene: slmA Feature: domain Description: slmA Location: 76360-76936 bp Feature: domain Description: slmA Location: 76360-76936 bp Feature: gene Location: 76996-77955 bp Ori: EIQ59817.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77131-77680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 771 31 -77680 bp Feature: gene Location: 78253-78894 bp Ori: EIQ59818.1 Gene: pyrE Feature: domain Description: pyrE Location: 78256-78889 bp Feature: domain Description: pyrE Location: 78256-78889 bp Feature: gene Location: 78960-79676 bp Ori: EIQ59819.1 Gene: rph Feature: domain Description: rph Location: 78963-79671 bp Feature: domain Description: rph Location: 78963-79671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AKNH01000018.1 Escherichia coli EPECa12 EPECa12.contig.17, whole genome shotgun sequence (36790 bp)
Overview 1 RT 1: 30702-34821 bp Neighborhood of RT #1 [30702, 34821] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 30702-31061 bp Ori: EIQ65994.1 Feature: domain Description: DUF1281 Location: 30711-31026 bp Feature: domain Description: DUF12 81 Location: 30711-3102 6 bp Feature: gene Location: 31280-31405 bp Feature: gene Location: 31666-33324 bp Ori: EIQ65996.1 Feature: domain Description: RVT_N Location: 31678-31921 bp Feature: domain Description: RVT_N Location: 31678-3192 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31966-32602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31966-32 602 bp Feature: domain Description: GIIM Note: maturase Location: 32653-32887 bp Feature: domain Description: GIIM Note: maturase Location: 32 653-32 887 bp Feature: domain Description: HNHc Note: nucleases Location: 33118-33268 bp Feature: domain Description: HNHc Note: nucleases Location: 33118-332 68 bp Feature: gene Location: 33946-34599 bp Ori: EIQ65997.1 Feature: domain Description: PRK13699 Location: 33991-34597 bp Feature: domain Description: PRK13699 Location: 33991-34597 bp Feature: gene Location: 34600-34821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AKNH01000046.1 Escherichia coli EPECa12 EPECa12.contig.45, whole genome shotgun sequence (100669 bp)
Overview 1 RT 1: 54189-57647 bp Neighborhood of RT #1 [54189, 57715] PRK10724 SmpB RVT-UG11 DDE_Tnp_1 Feature: gene Location: 54189-54578 bp Ori: EIQ62405.1 Gene: yfjG Feature: domain Description: PRK10724 Location: 54192-54576 bp Feature: domain Description: PRK10724 Location: 54192-54576 bp Feature: gene Location: 54796-55260 bp Ori: EIQ62406.1 Gene: smpB Feature: domain Description: SmpB Location: 54826-55201 bp Feature: domain Description: SmpB Location: 54826-55201 bp Feature: gene Location: 55963-56736 bp Ori: EIQ62407.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 56098-56551 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 56098-56551 bp Feature: gene Location: 56705-56878 bp Feature: gene Location: 57233-57715 bp Ori: EIQ62409.1 Feature: domain Description: DDE_Tnp_1 Location: 57404-57647 bp Feature: domain Description: DDE_Tnp_1 Location: 57404-57647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, DDE_Tnp_1 (pfam01609)