myRT

myRT report for GCA_000269545.1_PB_Bact_thet_CL09T03C10_V1

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Seq: AKBZ01000001.1 Bacteroides finegoldii CL09T03C10 cont1.1, whole genome shotgun sequence (1103199 bp)
Overview 1 RT 1: 110953-114623 bp 2 RT 2: 165688-174256 bp 3 RT 3: 707123-711943 bp Neighborhood of RT #1 [110953, 114685] RVT-GII Intron_maturas2 HNHc HU-HIG Neighborhood of RT #2 [165688, 176040] RVT-DGRs CotH LRR_AMN1 Neighborhood of RT #3 [707123, 711990] RVT-DGRs HTH_23 COG4584 IstB_IS21 Feature: gene Location: 110953-111483 bp Feature: gene Location: 111663-111866 bp Feature: gene Location: 111900-113705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112164-112986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 21 64-1 1 2986 bp Feature: domain Description: Intron_maturas2 Location: 113064-113394 bp Feature: domain Description: Intron_maturas2 Location: 1 1 3064-1 1 3394 bp Feature: domain Description: HNHc Note: nucleases Location: 113538-113682 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 3538-1 1 3682 bp Feature: gene Location: 113707-114222 bp Feature: gene Location: 114260-114685 bp Feature: domain Description: HU-HIG Location: 114344-114623 bp Feature: domain Description: HU-HIG Location: 1 1 4344-1 1 4623 bp Feature: gene Location: 165688-165978 bp Feature: gene Location: 166187-166669 bp Feature: gene Location: 166669-167970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166879-167557 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 66879-1 67557 bp Feature: gene Location: 168205-168366 bp Feature: gene Location: 168475-176040 bp Feature: domain Description: CotH Location: 172312-173203 bp Feature: domain Description: CotH Location: 1 7231 2-1 73203 bp Feature: domain Description: LRR_AMN1 Location: 173833-174256 bp Feature: domain Description: LRR_AMN1 Location: 1 73833-1 74256 bp Feature: gene Location: 707123-707365 bp Feature: gene Location: 707551-708036 bp Feature: gene Location: 708033-709334 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 708243-708921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 708243-708921 bp Feature: gene Location: 709662-711227 bp Feature: domain Description: HTH_23 Location: 709671-709797 bp Feature: domain Description: HTH_23 Location: 709671 -709797 bp Feature: domain Description: COG4584 Location: 709920-710577 bp Feature: domain Description: COG4584 Location: 709920-71 0577 bp Feature: gene Location: 711217-711990 bp Feature: domain Description: IstB_IS21 Location: 711418-711943 bp Feature: domain Description: IstB_IS21 Location: 71 1 41 8-71 1 943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HU-HIG (pfam18291), RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034), HTH_23 (pfam13384), COG4584 (Transposase ), IstB_IS21 (pfam01695)

Seq: AKBZ01000002.1 Bacteroides finegoldii CL09T03C10 cont1.2, whole genome shotgun sequence (907460 bp)
Overview 1 RT 1: 185669-191582 bp Neighborhood of RT #1 [185669, 191608] FepA TonB_dep_Rec PQQ_ABC_repeats RVT-DGRs Avd_like DUF1566 Feature: gene Location: 185669-187708 bp Feature: domain Description: FepA Location: 185687-186014 bp Feature: domain Description: FepA Location: 185687-186014 bp Feature: domain Description: TonB_dep_Rec Location: 186287-187703 bp Feature: domain Description: TonB_dep_Rec Location: 1862 87-187703 bp Feature: gene Location: 187711-188514 bp Feature: domain Description: PQQ_ABC_repeats Location: 188014-188443 bp Feature: domain Description: PQQ_ABC_repeats Location: 188014-188443 bp Feature: gene Location: 188837-190258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189209-189944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1892 09-189944 bp Feature: gene Location: 190273-190653 bp Feature: domain Description: Avd_like Location: 190300-190606 bp Feature: domain Description: Avd_like Location: 190300-190606 bp Feature: gene Location: 190799-191608 bp Feature: domain Description: DUF1566 Location: 191330-191582 bp Feature: domain Description: DUF1566 Location: 191330-191582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FepA (COG4771), TonB_dep_Rec (pfam00593), PQQ_ABC_repeats (TIGR03866), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: AKBZ01000003.1 Bacteroides finegoldii CL09T03C10 cont1.3, whole genome shotgun sequence (254773 bp)
Overview 1 RT 1: 209567-214680 bp 2 RT 2: 252980-254549 bp Neighborhood of RT #1 [209567, 214680] HTH_23 COG4584 IstB_IS21 RVT-GII Intron_maturas2 MPTase-PolyVal Neighborhood of RT #2 [252980, 254770] RVT-GII GIIM Feature: gene Location: 209567-211132 bp Feature: domain Description: HTH_23 Location: 209576-209702 bp Feature: domain Description: HTH_23 Location: 209576-209702 bp Feature: domain Description: COG4584 Location: 209825-210482 bp Feature: domain Description: COG4584 Location: 209825-210482 bp Feature: gene Location: 211122-211895 bp Feature: domain Description: IstB_IS21 Location: 211323-211848 bp Feature: domain Description: IstB_IS21 Location: 2113 23 -211848 bp Feature: gene Location: 212078-212890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212084-212162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212084-212162 bp Feature: domain Description: Intron_maturas2 Location: 212303-212543 bp Feature: domain Description: Intron_maturas2 Location: 2123 03 -212543 bp Feature: gene Location: 212892-214211 bp Feature: domain Description: MPTase-PolyVal Location: 213162-213471 bp Feature: domain Description: MPTase-PolyVal Location: 213 162-213 471 bp Feature: gene Location: 214264-214680 bp Feature: gene Location: 252980-253852 bp Feature: gene Location: 253874-254074 bp Feature: gene Location: 254159-254770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254165-254267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254165-254267 bp Feature: domain Description: GIIM Note: maturase Location: 254327-254549 bp Feature: domain Description: GIIM Note: maturase Location: 2543 27-254549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), COG4584 (Transposase ), IstB_IS21 (pfam01695), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), GIIM (pfam08388)

Seq: AKBZ01000004.1 Bacteroides finegoldii CL09T03C10 cont1.4, whole genome shotgun sequence (470032 bp)
Overview 1 RT 1: 301686-310179 bp Neighborhood of RT #1 [301686, 310232] DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 RVT-GII YkfC TIGR00043 YhdJ Feature: gene Location: 301686-304316 bp Feature: domain Description: DUF5118 Location: 301818-301965 bp Feature: domain Description: DUF5118 Location: 301818-301965 bp Feature: domain Description: DUF5117 Location: 301995-302577 bp Feature: domain Description: DUF5117 Location: 301995-302577 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 302604-302961 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 302604 -302961 bp Feature: domain Description: DUF4953 Location: 302979-303888 bp Feature: domain Description: DUF4 953 Location: 302979-303888 bp Feature: gene Location: 304325-306931 bp Feature: domain Description: DUF5118 Location: 304451-304595 bp Feature: domain Description: DUF5118 Location: 304 4 51-304 595 bp Feature: domain Description: DUF5117 Location: 304628-305225 bp Feature: domain Description: DUF5117 Location: 304 628-305225 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 305252-305579 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 305252-305579 bp Feature: domain Description: DUF4953 Location: 305624-306533 bp Feature: domain Description: DUF4 953 Location: 305624 -306533 bp Feature: gene Location: 307569-308885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307764-308379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307764 -308379 bp Feature: domain Description: YkfC Location: 308541-308658 bp Feature: domain Description: YkfC Location: 30854 1-308658 bp Feature: gene Location: 308984-309403 bp Feature: domain Description: TIGR00043 Location: 309095-309392 bp Feature: domain Description: TIGR0004 3 Location: 309095-309392 bp Feature: gene Location: 309417-310232 bp Feature: domain Description: YhdJ Location: 309435-310179 bp Feature: domain Description: YhdJ Location: 3094 35-310179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5118 (pfam17162), DUF5117 (pfam17148), ZnMc_MMP_like_2 (cd04276), DUF4953 (pfam16313), RVT-GII, YkfC (COG3344), TIGR00043 (rRNA maturation RNase YbeY), YhdJ (COG0863)

Seq: AKBZ01000005.1 Bacteroides finegoldii CL09T03C10 cont1.5, whole genome shotgun sequence (546880 bp)
Overview 1 RT 1: 298197-309580 bp Neighborhood of RT #1 [298197, 309580] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 298197-299342 bp Feature: domain Description: Arm-DNA-bind_5 Location: 298221-298467 bp Feature: domain Description: Arm-DNA-bind_5 Location: 298221-298467 bp Feature: domain Description: Phage_int_SAM_5 Location: 298506-298791 bp Feature: domain Description: Phage_int_SAM_5 Location: 2985 06-298791 bp Feature: domain Description: INTN1_C_like Location: 298830-299304 bp Feature: domain Description: INTN1_C_like Location: 298830-299304 bp Feature: gene Location: 299391-299885 bp Feature: gene Location: 299887-301242 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 300157-300835 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30015 7-300835 bp Feature: gene Location: 301616-308404 bp Feature: domain Description: Laminin_G_3 Location: 304052-304433 bp Feature: domain Description: Laminin_G_3 Location: 30405 2-304433 bp Feature: domain Description: pfam08757 Location: 305228-305552 bp Feature: domain Description: pfam0875 7 Location: 305 228-305 5 5 2 bp Feature: domain Description: LRR_AMN1 Location: 306158-306629 bp Feature: domain Description: LRR_AMN1 Location: 30615 8-306629 bp Feature: gene Location: 308414-309580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: AKBZ01000008.1 Bacteroides finegoldii CL09T03C10 cont1.8, whole genome shotgun sequence (428724 bp)
Overview 1 RT 1: 246458-251147 bp 2 RT 2: 300945-306234 bp Neighborhood of RT #1 [246458, 251147] TraG-D_C RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [300945, 306248] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 246458-246925 bp Feature: gene Location: 246949-248106 bp Feature: domain Description: TraG-D_C Location: 247474-247807 bp Feature: domain Description: TraG-D_C Location: 247474-247807 bp Feature: gene Location: 248093-249898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248357-249179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248357-249179 bp Feature: domain Description: Intron_maturas2 Location: 249257-249587 bp Feature: domain Description: Intron_maturas2 Location: 249257-249587 bp Feature: domain Description: HNHc Note: nucleases Location: 249731-249875 bp Feature: domain Description: HNHc Note: nucleases Location: 249731-249875 bp Feature: gene Location: 249900-250415 bp Feature: gene Location: 250443-251147 bp Feature: gene Location: 300945-301295 bp Feature: domain Description: DUF4133 Location: 300960-301230 bp Feature: domain Description: DUF4133 Location: 30096 0-301230 bp Feature: gene Location: 301525-303354 bp Feature: domain Description: Bac_Flav_CT_G Location: 301528-303340 bp Feature: domain Description: Bac_Flav_CT_G Location: 301528-303340 bp Feature: gene Location: 303901-305712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304165-304987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30416 5-304987 bp Feature: domain Description: Intron_maturas2 Location: 305062-305377 bp Feature: domain Description: Intron_maturas2 Location: 30506 2-305377 bp Feature: domain Description: HNHc Note: nucleases Location: 305533-305683 bp Feature: domain Description: HNHc Note: nucleases Location: 305533-3056 83 bp Feature: gene Location: 305790-306068 bp Feature: domain Description: Bac_Flav_CT_G Location: 305808-306066 bp Feature: domain Description: Bac_Flav_CT_G Location: 305808-306 06 6 bp Feature: gene Location: 306075-306248 bp Feature: domain Description: Bac_Flav_CT_G Location: 306078-306234 bp Feature: domain Description: Bac_Flav_CT_G Location: 306 078-306 234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)