myRT

myRT report for GCA_000269725.1_ASM26972v1

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Seq: AFSW01000014.1 Vibrio vulnificus JY1305 JY1305_14, whole genome shotgun sequence (5294 bp)
Overview 1 RT 1: 1-3267 bp Neighborhood of RT #1 [1, 3267] DDE_Tnp_1_assoc RVT-GII GIIM DUF3265 Feature: gene Location: 1-231 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 28-232 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 28-232 bp Feature: gene Location: 277-495 bp Feature: gene Location: 927-2171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 089-1 782 bp Feature: domain Description: GIIM Note: maturase Location: 1866-2070 bp Feature: domain Description: GIIM Note: maturase Location: 1 866-2070 bp Feature: gene Location: 2790-2954 bp Feature: domain Description: DUF3265 Location: 2853-2922 bp Feature: domain Description: DUF3265 Location: 2853-2922 bp Feature: gene Location: 3094-3267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), DUF3265 (pfam11665)

Seq: AFSW01000025.1 Vibrio vulnificus JY1305 JY1305_25, whole genome shotgun sequence (2018 bp)
Overview 1 RT 1: 313-1802 bp Neighborhood of RT #1 [313, 1987] RVT-GII GIIM Feature: gene Location: 313-468 bp Feature: gene Location: 476-616 bp Feature: gene Location: 773-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1538 bp Feature: domain Description: GIIM Note: maturase Location: 1589-1802 bp Feature: domain Description: GIIM Note: maturase Location: 1589-1802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AFSW01000032.1 Vibrio vulnificus JY1305 JY1305_32, whole genome shotgun sequence (442859 bp)
Overview 1 RT 1: 85255-88437 bp 2 RT 2: 417535-427120 bp Neighborhood of RT #1 [85255, 88505] RVT-GII SDF Neighborhood of RT #2 [417535, 427863] RMtype1_S_EcoJA69PI-TRD1-CR1_like RMtype1_S_EcoJA69PI-TRD1-CR1_like DUF4145 HsdR RVT-UG1 TniQ Feature: gene Location: 85255-85410 bp Feature: gene Location: 85418-85564 bp Feature: gene Location: 85715-86578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85859-86480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85859-86480 bp Feature: gene Location: 86731-86928 bp Feature: gene Location: 87225-88505 bp Feature: domain Description: SDF Location: 87243-88437 bp Feature: domain Description: SDF Location: 87243 -8843 7 bp Feature: gene Location: 417535-418740 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 417544-418102 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 417544-418102 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 418456-418720 bp Feature: domain Description: RMtype1_S_EcoJA69PI-TRD1-CR1_like Location: 418456-418720 bp Feature: gene Location: 418780-422394 bp Feature: domain Description: DUF4145 Location: 418906-419185 bp Feature: domain Description: DUF4145 Location: 418906-419185 bp Feature: domain Description: HsdR Location: 419491-422317 bp Feature: domain Description: HsdR Location: 419491-4223 17 bp Feature: gene Location: 422406-426095 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 423018-423534 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 423 018-423 53 4 bp Feature: gene Location: 426104-426580 bp Feature: gene Location: 426652-427863 bp Feature: domain Description: TniQ Location: 426667-427120 bp Feature: domain Description: TniQ Location: 426667-427120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SDF (pfam00375), RMtype1_S_EcoJA69PI-TRD1-CR1_like (cd17273), DUF4145 (pfam13643), HsdR (COG4096), RVT-UG1, TniQ (pfam06527)