myRT

myRT report for GCA_000271485.2_Pelosinus_fermentans_DSM_17108_v1.1

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Seq: AKVN02000001.1 Pelosinus fermentans DSM 17108 strain R7 ctg1, whole genome shotgun sequence (5009075 bp)
Overview 1 RT 1: 2442676-2448875 bp 2 RT 2: 2459352-2465676 bp 3 RT 3: 3603449-3609822 bp 4 RT 4: 4087636-4093215 bp 5 RT 5: 4893512-4899942 bp Neighborhood of RT #1 [2442676, 2448875] YfdV COG3666 DDE_Tnp_1_6 RVT-GII GIIM Neighborhood of RT #2 [2459352, 2465676] Phage_int_SAM_1 INT_RitC_C_like RVT-GII RVT-GII GIIM RVT-GII Neighborhood of RT #3 [3603449, 3609830] PocR YesM DBI_PRT RVT-GII GIIM His_Phos_1 cobS Neighborhood of RT #4 [4087636, 4093241] SstT RVT-GII GIIM NimA Neighborhood of RT #5 [4893512, 4899947] RpiR RVT-GII GIIM HDGYP PRK03170 Feature: gene Location: 2442676-2443638 bp Ori: OAM94232.1 Feature: domain Description: YfdV Location: 2442709-2443615 bp Feature: domain Description: YfdV Location: 2442709-244361 5 bp Feature: gene Location: 2444299-2445828 bp Ori: OAM94233.1 Feature: domain Description: COG3666 Location: 2444302-2444719 bp Feature: domain Description: COG3666 Location: 2444302-244471 9 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2445379-2445772 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 2445379-2445772 bp Feature: gene Location: 2446418-2447827 bp Ori: OAM94234.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446769-2447387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446769-2447387 bp Feature: domain Description: GIIM Note: maturase Location: 2447438-2447663 bp Feature: domain Description: GIIM Note: maturase Location: 2447438-2447663 bp Feature: gene Location: 2448372-2448554 bp Feature: gene Location: 2448660-2448875 bp Feature: gene Location: 2459352-2460371 bp Ori: OAM94251.1 Feature: domain Description: Phage_int_SAM_1 Location: 2459403-2459640 bp Feature: domain Description: Phage_int_SAM_1 Location: 2459403-2459640 bp Feature: domain Description: INT_RitC_C_like Location: 2459730-2460285 bp Feature: domain Description: INT_RitC_C_like Location: 2459730-2460285 bp Feature: gene Location: 2460654-2460929 bp Feature: gene Location: 2461017-2461610 bp Ori: OAM94253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461374-2461563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461 374-2461 563 bp Feature: gene Location: 2462391-2463635 bp Ori: OAM94254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462595-2463252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2462595-2463252 bp Feature: domain Description: GIIM Note: maturase Location: 2463333-2463549 bp Feature: domain Description: GIIM Note: maturase Location: 2463333-2463549 bp Feature: gene Location: 2463712-2464302 bp Ori: OAM94255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463718-2463922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246371 8-2463922 bp Feature: gene Location: 2464670-2465146 bp Feature: gene Location: 2465251-2465676 bp Feature: gene Location: 3603449-3604660 bp Ori: OAM95358.1 Feature: domain Description: PocR Location: 3603482-3603962 bp Feature: domain Description: PocR Location: 3603482-3603962 bp Feature: domain Description: YesM Location: 3603980-3604649 bp Feature: domain Description: YesM Location: 3603980-3604649 bp Feature: gene Location: 3604923-3605957 bp Ori: OAM95359.1 Feature: domain Description: DBI_PRT Location: 3604935-3605910 bp Feature: domain Description: DBI_PRT Location: 3604935-360591 0 bp Feature: gene Location: 3606233-3607642 bp Ori: OAM95360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606584-3607202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606584-3607202 bp Feature: domain Description: GIIM Note: maturase Location: 3607253-3607466 bp Feature: domain Description: GIIM Note: maturase Location: 3607253-3607466 bp Feature: gene Location: 3608442-3609053 bp Ori: OAM95361.1 Feature: domain Description: His_Phos_1 Location: 3608454-3609033 bp Feature: domain Description: His_Phos_1 Location: 3608454-3609033 bp Feature: gene Location: 3609072-3609830 bp Ori: OAM95362.1 Feature: domain Description: cobS Location: 3609090-3609822 bp Feature: domain Description: cobS Location: 3609090-3609822 bp Feature: gene Location: 4087636-4088847 bp Ori: OAM95775.1 Feature: domain Description: SstT Location: 4087645-4088842 bp Feature: domain Description: SstT Location: 4087645-4088842 bp Feature: gene Location: 4089710-4089958 bp Feature: gene Location: 4090012-4091421 bp Ori: OAM95777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4090363-4090981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4090363-4090981 bp Feature: domain Description: GIIM Note: maturase Location: 4091032-4091245 bp Feature: domain Description: GIIM Note: maturase Location: 4091 032-4091 245 bp Feature: gene Location: 4091886-4092191 bp Feature: gene Location: 4092756-4093241 bp Ori: OAM95779.1 Feature: domain Description: NimA Location: 4092768-4093215 bp Feature: domain Description: NimA Location: 4092768-409321 5 bp Feature: gene Location: 4893512-4894282 bp Feature: gene Location: 4894853-4895707 bp Ori: OAM96488.1 Feature: domain Description: RpiR Location: 4894874-4895696 bp Feature: domain Description: RpiR Location: 4894874-4895696 bp Feature: gene Location: 4895828-4897237 bp Ori: OAM96489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4896179-4896797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48961 79-4896797 bp Feature: domain Description: GIIM Note: maturase Location: 4896848-4897061 bp Feature: domain Description: GIIM Note: maturase Location: 4896848-4897061 bp Feature: gene Location: 4897739-4898773 bp Ori: OAM96490.1 Feature: domain Description: HDGYP Location: 4897931-4898612 bp Feature: domain Description: HDGYP Location: 4897931 -489861 2 bp Feature: gene Location: 4899069-4899947 bp Ori: OAM96491.1 Feature: domain Description: PRK03170 Location: 4899087-4899942 bp Feature: domain Description: PRK031 70 Location: 4899087-4899942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfdV (COG0679), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), PocR (pfam10114), YesM (COG2972), DBI_PRT (pfam02277)
His_Phos_1 (pfam00300), cobS (TIGR00317), SstT (COG3633), NimA (COG3467), RpiR (COG1737), HDGYP (COG2206), PRK03170 (dihydrodipicolinate synthase; Provisional)