myRT

myRT report for GCA_000272085.2_ASM27208v2

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Seq: AJZC02000062.1 Vibrio crassostreae ZF-91 ZF-91_contig_167, whole genome shotgun sequence (22123 bp)
Overview 1 RT 1: 6872-14785 bp Neighborhood of RT #1 [6872, 14787] TMAO_torS TMAO_torS RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 6872-7051 bp Feature: gene Location: 7171-9591 bp Ori: OED86077.1 Feature: domain Description: TMAO_torS Location: 8098-8842 bp Feature: domain Description: TMAO_torS Location: 8098-8842 bp Feature: domain Description: TMAO_torS Location: 9142-9577 bp Feature: domain Description: TMAO_torS Location: 91 42-9577 bp Feature: gene Location: 9859-11511 bp Ori: OED86078.1 Feature: domain Description: RVT_N Location: 9910-10153 bp Feature: domain Description: RVT_N Location: 991 0-1 01 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10198-10843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 98-1 0843 bp Feature: domain Description: GIIM Note: maturase Location: 10894-11128 bp Feature: domain Description: GIIM Note: maturase Location: 1 0894-1 1 1 28 bp Feature: domain Description: HNHc Note: nucleases Location: 11344-11506 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 344-1 1 506 bp Feature: gene Location: 12644-14290 bp Ori: OED86079.1 Feature: domain Description: groEL Location: 12650-14270 bp Feature: domain Description: groEL Location: 1 2650-1 4270 bp Feature: gene Location: 14497-14787 bp Ori: OED86080.1 Gene: groES Feature: domain Description: groES Location: 14500-14785 bp Feature: domain Description: groES Location: 1 4500-1 4785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: AJZC02000272.1 Vibrio crassostreae ZF-91 ZF-91_contig_75, whole genome shotgun sequence (906 bp)
Overview 1 RT 1: 1-616 bp Neighborhood of RT #1 [1, 748] RVT-GII Feature: gene Location: 1-748 bp Ori: OED72668.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJZC02000233.1 Vibrio crassostreae ZF-91 ZF-91_contig_499, whole genome shotgun sequence (906 bp)
Overview 1 RT 1: 1-571 bp Neighborhood of RT #1 [1, 703] RVT-GII Feature: gene Location: 1-703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJZC02000092.1 Vibrio crassostreae ZF-91 ZF-91_contig_21, whole genome shotgun sequence (22052 bp)
Overview 1 RT 1: 544-4866 bp Neighborhood of RT #1 [544, 4991] RVT_N RVT-GII GIIM DUF915 Feature: gene Location: 544-903 bp Feature: gene Location: 1411-3042 bp Ori: OED84569.1 Feature: domain Description: RVT_N Location: 1618-1861 bp Feature: domain Description: RVT_N Location: 1618-1861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2533 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2818 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2818 bp Feature: gene Location: 3199-3408 bp Feature: gene Location: 3870-4991 bp Ori: OED84571.1 Feature: domain Description: DUF915 Location: 4467-4866 bp Feature: domain Description: DUF915 Location: 4 4 67-4 866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF915 (pfam06028)

Seq: AJZC02000068.1 Vibrio crassostreae ZF-91 ZF-91_contig_174, whole genome shotgun sequence (3571 bp)
Overview 1 RT 1: 516-3539 bp Neighborhood of RT #1 [516, 3539] RVT-UG4 Feature: gene Location: 516-1016 bp Feature: gene Location: 1292-1918 bp Ori: OED85754.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1301-1754 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1301-175 4 bp Feature: gene Location: 2403-3539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4