myRT

myRT report for GCA_000272185.2_ASM27218v2

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Seq: CP016228.1 Vibrio crassostreae 9CS106 chromosome 1, complete sequence (3365430 bp)
Overview 1 RT 1: 24343-31672 bp 2 RT 2: 2599530-2604803 bp Neighborhood of RT #1 [24343, 32049] PRK11815 INT_Rci_Hp1_C RVT-Retrons GDPD Neighborhood of RT #2 [2599530, 2604829] tig RVT_N RVT-GII GIIM PRK05427 RlpA Feature: gene Location: 24343-25344 bp Ori: ANP74922.1 Feature: domain Description: PRK11815 Location: 24358-25333 bp Feature: domain Description: PRK1 1 81 5 Location: 24358-25333 bp Feature: gene Location: 25511-25813 bp Ori: ANP74923.1 Feature: domain Description: INT_Rci_Hp1_C Location: 25565-25763 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 25565-25763 bp Feature: gene Location: 25814-27628 bp Ori: ANP74924.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26036-26660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26036-26660 bp Feature: gene Location: 28167-30530 bp Feature: gene Location: 30574-32049 bp Ori: ANP74926.1 Feature: domain Description: GDPD Location: 30859-31672 bp Feature: domain Description: GDPD Location: 30859-31 672 bp Feature: gene Location: 2599530-2599847 bp Feature: gene Location: 2600003-2600494 bp Ori: ANP77052.1 Feature: domain Description: tig Location: 2600171-2600480 bp Feature: domain Description: tig Location: 26001 71 -2600480 bp Feature: gene Location: 2601265-2602738 bp Feature: domain Description: RVT_N Location: 2601313-2601556 bp Feature: domain Description: RVT_N Location: 2601 31 3-2601 556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2601601-2602228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2601 601 -2602228 bp Feature: domain Description: GIIM Note: maturase Location: 2602288-2602513 bp Feature: domain Description: GIIM Note: maturase Location: 2602288-260251 3 bp Feature: gene Location: 2602921-2603934 bp Ori: ANP77053.1 Feature: domain Description: PRK05427 Location: 2603020-2603926 bp Feature: domain Description: PRK05427 Location: 2603020-2603926 bp Feature: gene Location: 2604377-2604829 bp Ori: ANP77054.1 Feature: domain Description: RlpA Location: 2604485-2604803 bp Feature: domain Description: RlpA Location: 2604485-2604803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11815 (tRNA dihydrouridine(20/20a) synthase DusA), INT_Rci_Hp1_C (cd00796), RVT-Retrons, GDPD (pfam03009), tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), RlpA (COG0797)

Seq: CP016229.1 Vibrio crassostreae 9CS106 chromosome 2, complete sequence (1859082 bp)
Overview 1 RT 1: 252037-258089 bp 2 RT 2: 1043617-1055583 bp 3 RT 3: 1088457-1094785 bp Neighborhood of RT #1 [252037, 258118] GATase1_AraC_1 UlaG RVT_N RVT-GII GIIM RAYT PRK03573 Neighborhood of RT #2 [1043617, 1055585] PLDc_unchar6 RVT_N RVT-GII GIIM TraD_Ftype TraI_TIGR Neighborhood of RT #3 [1088457, 1095750] HsdM INT_RitA_C_like RVT-UG2 DUF3644 EC042_2821 Palm_thioest Feature: gene Location: 252037-253000 bp Feature: domain Description: GATase1_AraC_1 Location: 252067-252616 bp Feature: domain Description: GATase1_AraC_1 Location: 2 52 067-2 52 616 bp Feature: gene Location: 253115-253906 bp Ori: ANP77936.1 Feature: domain Description: UlaG Location: 253118-253901 bp Feature: domain Description: UlaG Location: 2 53118-2 53901 bp Feature: gene Location: 254542-256014 bp Ori: ANP79213.1 Feature: domain Description: RVT_N Location: 254590-254833 bp Feature: domain Description: RVT_N Location: 2 54590-2 54833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254878-255505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 54878-2 55505 bp Feature: domain Description: GIIM Note: maturase Location: 255565-255790 bp Feature: domain Description: GIIM Note: maturase Location: 2 55565-2 55790 bp Feature: gene Location: 256402-257259 bp Ori: ANP77937.1 Feature: domain Description: RAYT Location: 256408-256816 bp Feature: domain Description: RAYT Location: 2 56408-2 56816 bp Feature: gene Location: 257651-258118 bp Ori: ANP77938.1 Feature: domain Description: PRK03573 Location: 257684-258089 bp Feature: domain Description: PRK03573 Location: 2 57684-2 58089 bp Feature: gene Location: 1043617-1044327 bp Ori: ANP78533.1 Feature: domain Description: PLDc_unchar6 Location: 1043656-1043959 bp Feature: domain Description: PLDc_unchar6 Location: 1043656-1043959 bp Feature: gene Location: 1044776-1045046 bp Feature: gene Location: 1045808-1047280 bp Ori: ANP79237.1 Feature: domain Description: RVT_N Location: 1045856-1046099 bp Feature: domain Description: RVT_N Location: 1045856-1046099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046144-1046771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046144-1046771 bp Feature: domain Description: GIIM Note: maturase Location: 1046831-1047056 bp Feature: domain Description: GIIM Note: maturase Location: 1046831-1047056 bp Feature: gene Location: 1047578-1049617 bp Ori: ANP78534.1 Feature: domain Description: TraD_Ftype Location: 1047590-1049303 bp Feature: domain Description: TraD_Ftype Location: 1047590-1049303 bp Feature: gene Location: 1049805-1055585 bp Ori: ANP78535.1 Feature: domain Description: TraI_TIGR Location: 1049808-1055583 bp Feature: domain Description: TraI_TIGR Location: 1049808-1055583 bp Feature: gene Location: 1088457-1090160 bp Ori: ANP78569.1 Feature: domain Description: HsdM Location: 1088478-1090143 bp Feature: domain Description: HsdM Location: 1088478-1090143 bp Feature: gene Location: 1090271-1090867 bp Ori: ANP78570.1 Feature: domain Description: INT_RitA_C_like Location: 1090319-1090850 bp Feature: domain Description: INT_RitA_C_like Location: 1090319-1090850 bp Feature: gene Location: 1090948-1092258 bp Ori: ANP78571.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1091149-1091962 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1091149-1091962 bp Feature: gene Location: 1092752-1094056 bp Ori: ANP78572.1 Feature: domain Description: DUF3644 Location: 1093136-1093334 bp Feature: domain Description: DUF3644 Location: 1093136-1093334 bp Feature: domain Description: EC042_2821 Location: 1093433-1094033 bp Feature: domain Description: EC042 _2 82 1 Location: 1093433-1094033 bp Feature: gene Location: 1094197-1095750 bp Ori: ANP78573.1 Feature: domain Description: Palm_thioest Location: 1094482-1094785 bp Feature: domain Description: Palm_thioest Location: 1094482 -1094785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_AraC_1 (cd03137), UlaG (COG2220), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK03573 (transcriptional regulator SlyA; Provisional), PLDc_unchar6 (cd09176), TraD_Ftype (TIGR02759), TraI_TIGR (TIGR02760)
HsdM (COG0286), INT_RitA_C_like (cd01188), RVT-UG2, DUF3644 (pfam12358), EC042_2821 (pfam18740), Palm_thioest (pfam02089)