myRT

myRT report for GCA_000273095.1_Bact_frag_CL03T00C08_V1

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Seq: JH724173.1 Bacteroides fragilis CL03T00C08 genomic scaffold supercont1.1, whole genome shotgun sequence (3104543 bp)
Overview 1 RT 1: 1310031-1318989 bp 2 RT 2: 1623593-1627579 bp 3 RT 3: 2751776-2755654 bp Neighborhood of RT #1 [1310031, 1318997] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [1623593, 1627599] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Neighborhood of RT #3 [2751776, 2755707] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1310031-1312220 bp Ori: EIY50176.1 Feature: domain Description: GlnA3 Location: 1310106-1312218 bp Feature: domain Description: GlnA3 Location: 1 31 01 06-1 31 221 8 bp Feature: gene Location: 1312460-1314679 bp Feature: gene Location: 1314886-1315998 bp Ori: EIY50178.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1315201-1315750 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 31 5201 -1 31 5750 bp Feature: gene Location: 1316140-1317933 bp Ori: EIY50179.1 Feature: domain Description: rpsA Location: 1316218-1317826 bp Feature: domain Description: rpsA Location: 1 31 621 8-1 31 7826 bp Feature: gene Location: 1318083-1318997 bp Ori: EIY50180.1 Feature: domain Description: RNase_Z Location: 1318098-1318989 bp Feature: domain Description: RNase_Z Location: 1 31 8098-1 31 8989 bp Feature: gene Location: 1623593-1624174 bp Ori: EIY50448.1 Feature: domain Description: TraO Location: 1623671-1624169 bp Feature: domain Description: TraO Location: 1 623671 -1 6241 69 bp Feature: gene Location: 1624178-1625059 bp Ori: EIY50449.1 Feature: domain Description: Bac_Flav_CT_N Location: 1624301-1625039 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 624301 -1 625039 bp Feature: gene Location: 1625049-1626857 bp Ori: EIY50450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625313-1626135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62531 3-1 6261 35 bp Feature: domain Description: Intron_maturas2 Location: 1626294-1626516 bp Feature: domain Description: Intron_maturas2 Location: 1 626294-1 62651 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1626690-1626831 bp Feature: domain Description: HNHc Note: nucleases Location: 1 626690-1 626831 bp Feature: gene Location: 1626884-1627360 bp Feature: gene Location: 1627399-1627599 bp Ori: EIY50452.1 Feature: domain Description: Bac_Flav_CT_N Location: 1627402-1627579 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 627402-1 627579 bp Feature: gene Location: 2751776-2752186 bp Ori: EIY47446.1 Feature: domain Description: Cas_Cmr5 Location: 2751824-2752070 bp Feature: domain Description: Cas_Cmr5 Location: 2751 824-2752070 bp Feature: gene Location: 2752189-2753133 bp Ori: EIY47447.1 Feature: domain Description: Cmr6_III-B Location: 2752345-2753122 bp Feature: domain Description: Cmr6_III-B Location: 2752345-27531 22 bp Feature: gene Location: 2753153-2753884 bp Ori: EIY47448.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2753360-2753879 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2753360-2753879 bp Feature: gene Location: 2753897-2755423 bp Ori: EIY47449.1 Feature: domain Description: Cas1_I-II-III Location: 2754425-2755382 bp Feature: domain Description: Cas1 _I-II-III Location: 2754425-2755382 bp Feature: gene Location: 2755417-2755707 bp Ori: EIY47450.1 Feature: domain Description: Cas2_I_II_III Location: 2755444-2755654 bp Feature: domain Description: Cas2_I_II_III Location: 2755444-2755654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Cas_Cmr5 (pfam09701)
Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)