myRT

myRT report for GCA_000273115.1_Bact_frag_CL03T12C07_V1

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Seq: JH724184.1 Bacteroides fragilis CL03T12C07 genomic scaffold supercont1.4, whole genome shotgun sequence (877841 bp)
Overview 1 RT 1: 448206-452207 bp 2 RT 2: 758435-767399 bp Neighborhood of RT #1 [448206, 452212] Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N TraO Neighborhood of RT #2 [758435, 767401] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 448206-448406 bp Ori: EIY42637.1 Feature: domain Description: Bac_Flav_CT_N Location: 448209-448386 bp Feature: domain Description: Bac_Flav_CT_N Location: 448209-448386 bp Feature: gene Location: 448445-448921 bp Feature: gene Location: 448948-450756 bp Ori: EIY42639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449212-450034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44921 2-450034 bp Feature: domain Description: Intron_maturas2 Location: 450193-450415 bp Feature: domain Description: Intron_maturas2 Location: 4501 93-45041 5 bp Feature: domain Description: HNHc Note: nucleases Location: 450589-450730 bp Feature: domain Description: HNHc Note: nucleases Location: 450589-450730 bp Feature: gene Location: 450746-451627 bp Ori: EIY42640.1 Feature: domain Description: Bac_Flav_CT_N Location: 450869-451607 bp Feature: domain Description: Bac_Flav_CT_N Location: 450869-451 607 bp Feature: gene Location: 451631-452212 bp Ori: EIY42641.1 Feature: domain Description: TraO Location: 451709-452207 bp Feature: domain Description: TraO Location: 451 709-452207 bp Feature: gene Location: 758435-759349 bp Ori: EIY42382.1 Feature: domain Description: RNase_Z Location: 758450-759341 bp Feature: domain Description: RNase_Z Location: 758450-759341 bp Feature: gene Location: 759499-761292 bp Ori: EIY42383.1 Feature: domain Description: rpsA Location: 759577-761185 bp Feature: domain Description: rpsA Location: 759577-761 1 85 bp Feature: gene Location: 761434-762546 bp Ori: EIY42384.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 761749-762298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 761 749-762298 bp Feature: gene Location: 762753-764972 bp Feature: gene Location: 765212-767401 bp Ori: EIY42386.1 Feature: domain Description: GlnA3 Location: 765287-767399 bp Feature: domain Description: GlnA3 Location: 765287-767399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraO (pfam10626), RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: JH724183.1 Bacteroides fragilis CL03T12C07 genomic scaffold supercont1.3, whole genome shotgun sequence (1028707 bp)
Overview 1 RT 1: 676525-680403 bp Neighborhood of RT #1 [676525, 680456] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 676525-676935 bp Ori: EIY44183.1 Feature: domain Description: Cas_Cmr5 Location: 676573-676819 bp Feature: domain Description: Cas_Cmr5 Location: 676573-676819 bp Feature: gene Location: 676938-677882 bp Ori: EIY44184.1 Feature: domain Description: Cmr6_III-B Location: 677094-677871 bp Feature: domain Description: Cmr6_III-B Location: 677094-677871 bp Feature: gene Location: 677902-678633 bp Ori: EIY44185.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 678109-678628 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 678109-67862 8 bp Feature: gene Location: 678646-680172 bp Ori: EIY44186.1 Feature: domain Description: Cas1_I-II-III Location: 679174-680131 bp Feature: domain Description: Cas1_I-II-III Location: 679174-680131 bp Feature: gene Location: 680166-680456 bp Ori: EIY44187.1 Feature: domain Description: Cas2_I_II_III Location: 680193-680403 bp Feature: domain Description: Cas2 _I_II_III Location: 680193-680403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)