myRT

myRT report for GCA_000273195.1_Bact_ovat_CL02T12C04_V1

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Seq: JH724230.1 Bacteroides ovatus CL02T12C04 genomic scaffold supercont1.5, whole genome shotgun sequence (349100 bp)
Overview 1 RT 1: 1-4995 bp 2 RT 2: 255822-262293 bp Neighborhood of RT #1 [1, 5204] Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 KOG0730 Neighborhood of RT #2 [255822, 262430] Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 YhdJ Feature: gene Location: 1-825 bp Ori: EIY56638.1 Feature: domain Description: Bac_Flav_CT_G Location: 4-826 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-826 bp Feature: gene Location: 822-1217 bp Ori: EIY56639.1 Feature: domain Description: DUF4133 Location: 951-1182 bp Feature: domain Description: DUF41 33 Location: 951 -1 1 82 bp Feature: gene Location: 1207-3015 bp Ori: EIY56640.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1471-2290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 471 -2290 bp Feature: domain Description: Intron_maturas2 Location: 2365-2692 bp Feature: domain Description: Intron_maturas2 Location: 2365-2692 bp Feature: domain Description: HNHc Note: nucleases Location: 2845-2992 bp Feature: domain Description: HNHc Note: nucleases Location: 2845-2992 bp Feature: gene Location: 3624-3920 bp Ori: EIY56641.1 Feature: domain Description: DUF4134 Location: 3645-3915 bp Feature: domain Description: DUF41 34 Location: 3645-391 5 bp Feature: gene Location: 4215-5204 bp Ori: EIY56642.1 Feature: domain Description: KOG0730 Location: 4458-4995 bp Feature: domain Description: KOG0730 Location: 4458-4995 bp Feature: gene Location: 255822-258347 bp Ori: EIY56005.1 Feature: domain Description: Bac_Flav_CT_G Location: 255825-258312 bp Feature: domain Description: Bac_Flav_CT_G Location: 255825-25831 2 bp Feature: gene Location: 258344-258739 bp Ori: EIY56006.1 Feature: domain Description: DUF4133 Location: 258473-258704 bp Feature: domain Description: DUF41 33 Location: 258473-258704 bp Feature: gene Location: 258729-260537 bp Ori: EIY56007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258993-259812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258993-25981 2 bp Feature: domain Description: Intron_maturas2 Location: 259887-260214 bp Feature: domain Description: Intron_maturas2 Location: 259887-26021 4 bp Feature: domain Description: HNHc Note: nucleases Location: 260367-260514 bp Feature: domain Description: HNHc Note: nucleases Location: 260367-26051 4 bp Feature: gene Location: 261146-261442 bp Ori: EIY56008.1 Feature: domain Description: DUF4134 Location: 261167-261437 bp Feature: domain Description: DUF41 34 Location: 261 1 67-261 437 bp Feature: gene Location: 261537-262430 bp Ori: EIY56009.1 Feature: domain Description: YhdJ Location: 261585-262293 bp Feature: domain Description: YhdJ Location: 261 585-262293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), KOG0730 (KOG0730, AAA+-type ATPase ), YhdJ (COG0863)

Seq: JH724228.1 Bacteroides ovatus CL02T12C04 genomic scaffold supercont1.3, whole genome shotgun sequence (1151692 bp)
Overview 1 RT 1: 1112127-1116060 bp Neighborhood of RT #1 [1112127, 1116060] RVT-UG27 Feature: gene Location: 1112127-1112606 bp Feature: gene Location: 1112656-1113153 bp Feature: gene Location: 1113476-1114738 bp Ori: EIY58414.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1113668-1114304 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 1113668-1114304 bp Feature: gene Location: 1114731-1115369 bp Feature: gene Location: 1115413-1116060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: JH724226.1 Bacteroides ovatus CL02T12C04 genomic scaffold supercont1.1, whole genome shotgun sequence (3602474 bp)
Overview 1 RT 1: 345836-349031 bp 2 RT 2: 571452-582797 bp 3 RT 3: 918307-923525 bp 4 RT 4: 1236585-1241767 bp 5 RT 5: 1271981-1275483 bp 6 RT 6: 1425316-1430037 bp 7 RT 7: 1550357-1555839 bp 8 RT 8: 1624881-1630929 bp 9 RT 9: 2674802-2681449 bp 10 RT 10: 3028728-3040995 bp Neighborhood of RT #1 [345836, 349031] Gp49 HTH_XRE RVT-DGRs Neighborhood of RT #2 [571452, 582835] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #3 [918307, 923525] PHA00430 RVT-DGRs Neighborhood of RT #4 [1236585, 1242228] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Neighborhood of RT #5 [1271981, 1275512] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #6 [1425316, 1430378] Avd_like RVT-DGRs MutS_I TMAO_torS Neighborhood of RT #7 [1550357, 1555880] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #8 [1624881, 1631579] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Neighborhood of RT #9 [2674802, 2681449] T4SS-DNA_transf RVT-GII GIIM DUF1016_N YhcG_C Neighborhood of RT #10 [3028728, 3041120] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 345836-346180 bp Ori: EIY68513.1 Feature: domain Description: Gp49 Location: 345890-346151 bp Feature: domain Description: Gp49 Location: 3 45890-3 46151 bp Feature: gene Location: 346185-346496 bp Ori: EIY68514.1 Feature: domain Description: HTH_XRE Location: 346299-346455 bp Feature: domain Description: HTH_XRE Location: 3 46299-3 46455 bp Feature: gene Location: 346747-348237 bp Ori: EIY68515.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 347140-347737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 47140-3 4773 7 bp Feature: gene Location: 348306-348788 bp Feature: gene Location: 348795-349031 bp Feature: gene Location: 571452-572618 bp Feature: gene Location: 572628-579416 bp Ori: EIY68740.1 Feature: domain Description: Laminin_G_3 Location: 575064-575445 bp Feature: domain Description: Laminin_G_3 Location: 575064-575445 bp Feature: domain Description: pfam08757 Location: 576240-576564 bp Feature: domain Description: pfam08757 Location: 576240-576564 bp Feature: domain Description: LRR_AMN1 Location: 577170-577638 bp Feature: domain Description: LRR_AMN1 Location: 577170-57763 8 bp Feature: gene Location: 579829-581145 bp Ori: EIY68741.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 580066-580657 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 580066-580657 bp Feature: gene Location: 581147-581641 bp Feature: gene Location: 581690-582835 bp Ori: EIY68743.1 Feature: domain Description: Arm-DNA-bind_5 Location: 581714-581960 bp Feature: domain Description: Arm-DNA-bind_5 Location: 581714-581960 bp Feature: domain Description: Phage_int_SAM_5 Location: 581999-582284 bp Feature: domain Description: Phage_int_SAM_5 Location: 581999-582284 bp Feature: domain Description: INTN1_C_like Location: 582323-582797 bp Feature: domain Description: INTN1_C_like Location: 5823 23 -582797 bp Feature: gene Location: 918307-919065 bp Ori: EIY67871.1 Feature: domain Description: PHA00430 Location: 918493-918787 bp Feature: domain Description: PHA0043 0 Location: 918493 -918787 bp Feature: gene Location: 919084-920553 bp Feature: gene Location: 921059-922699 bp Ori: EIY67873.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 921266-922007 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 921266-922007 bp Feature: gene Location: 922702-923076 bp Feature: gene Location: 923271-923525 bp Feature: gene Location: 1236585-1236755 bp Ori: EIY66776.1 Feature: domain Description: DUF3875 Location: 1236594-1236750 bp Feature: domain Description: DUF3 875 Location: 123 6594-123 6750 bp Feature: gene Location: 1236852-1238681 bp Ori: EIY66777.1 Feature: domain Description: Bac_Flav_CT_G Location: 1236855-1238667 bp Feature: domain Description: Bac_Flav_CT_G Location: 123 6855-123 8667 bp Feature: gene Location: 1239228-1241039 bp Ori: EIY66778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239492-1240314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 9492-12403 14 bp Feature: domain Description: Intron_maturas2 Location: 1240389-1240704 bp Feature: domain Description: Intron_maturas2 Location: 12403 89-1240704 bp Feature: domain Description: HNHc Note: nucleases Location: 1240860-1241010 bp Feature: domain Description: HNHc Note: nucleases Location: 1240860-1241010 bp Feature: gene Location: 1241117-1241395 bp Ori: EIY66779.1 Feature: domain Description: Bac_Flav_CT_G Location: 1241135-1241393 bp Feature: domain Description: Bac_Flav_CT_G Location: 124113 5-12413 93 bp Feature: gene Location: 1241596-1242228 bp Ori: EIY66780.1 Feature: domain Description: DUF4141 Location: 1241614-1241767 bp Feature: domain Description: DUF4141 Location: 1241614-1241767 bp Feature: gene Location: 1271981-1272268 bp Feature: gene Location: 1272472-1272750 bp Feature: gene Location: 1272713-1274134 bp Ori: EIY66819.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1273088-1273790 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1273 088-1273 790 bp Feature: gene Location: 1274149-1274556 bp Ori: EIY66820.1 Feature: domain Description: Avd_like Location: 1274182-1274491 bp Feature: domain Description: Avd_like Location: 1274182-1274491 bp Feature: gene Location: 1274703-1275512 bp Ori: EIY66821.1 Feature: domain Description: DUF1566 Location: 1275234-1275483 bp Feature: domain Description: DUF1566 Location: 127523 4-1275483 bp Feature: gene Location: 1425316-1425520 bp Feature: gene Location: 1425626-1426000 bp Ori: EIY65934.1 Feature: domain Description: Avd_like Location: 1425653-1425959 bp Feature: domain Description: Avd_like Location: 1425653 -1425959 bp Feature: gene Location: 1426290-1427552 bp Ori: EIY65935.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1426518-1427208 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1426518-1427208 bp Feature: gene Location: 1427549-1428025 bp Ori: EIY65936.1 Feature: domain Description: MutS_I Location: 1427600-1427795 bp Feature: domain Description: MutS_I Location: 1427600-1427795 bp Feature: gene Location: 1428087-1430378 bp Ori: EIY65937.1 Feature: domain Description: TMAO_torS Location: 1428948-1430037 bp Feature: domain Description: TMAO_torS Location: 1428948-143 003 7 bp Feature: gene Location: 1550357-1550671 bp Ori: EIY66042.1 Feature: domain Description: DUF3876 Location: 1550411-1550660 bp Feature: domain Description: DUF3 876 Location: 1550411-1550660 bp Feature: gene Location: 1550686-1552380 bp Ori: EIY66043.1 Feature: domain Description: Bac_Flav_CT_G Location: 1550806-1552372 bp Feature: domain Description: Bac_Flav_CT_G Location: 1550806-15523 72 bp Feature: gene Location: 1552377-1554038 bp Ori: EIY66044.1 Feature: domain Description: RVT_N Location: 1552431-1552674 bp Feature: domain Description: RVT_N Location: 155243 1-1552674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552719-1553367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552719-1553 3 67 bp Feature: domain Description: GIIM Note: maturase Location: 1553421-1553652 bp Feature: domain Description: GIIM Note: maturase Location: 1553 421-1553 652 bp Feature: gene Location: 1554622-1555560 bp Ori: EIY66045.1 Feature: domain Description: Bac_Flav_CT_G Location: 1554625-1555546 bp Feature: domain Description: Bac_Flav_CT_G Location: 1554625-1555546 bp Feature: gene Location: 1555557-1555880 bp Ori: EIY66046.1 Feature: domain Description: DUF4133 Location: 1555572-1555839 bp Feature: domain Description: DUF413 3 Location: 1555572-155583 9 bp Feature: gene Location: 1624881-1625459 bp Ori: EIY66122.1 Feature: domain Description: NGN_SP_UpxY Location: 1624959-1625241 bp Feature: domain Description: NGN_SP_UpxY Location: 1624959-1625241 bp Feature: domain Description: KOW_NusG Location: 1625292-1625403 bp Feature: domain Description: KOW_NusG Location: 1625292-1625403 bp Feature: gene Location: 1625794-1626759 bp Ori: EIY66123.1 Feature: domain Description: Phage_int_SAM_5 Location: 1625827-1626082 bp Feature: domain Description: Phage_int_SAM_5 Location: 1625827-1626082 bp Feature: domain Description: INTN1_C_like Location: 1626187-1626664 bp Feature: domain Description: INTN1_C_like Location: 1626187-1626664 bp Feature: gene Location: 1627038-1629257 bp Ori: EIY66124.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1627239-1627824 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162723 9-1627824 bp Feature: gene Location: 1629235-1629879 bp Feature: gene Location: 1629876-1631579 bp Ori: EIY66126.1 Feature: domain Description: REC Location: 1630671-1630929 bp Feature: domain Description: REC Location: 163 0671-163 0929 bp Feature: gene Location: 2674802-2675458 bp Feature: gene Location: 2675487-2677673 bp Ori: EIY63113.1 Feature: domain Description: T4SS-DNA_transf Location: 2676048-2677332 bp Feature: domain Description: T4SS-DNA_transf Location: 2676048-26773 3 2 bp Feature: gene Location: 2678145-2679551 bp Ori: EIY63114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678487-2679105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678487-2679105 bp Feature: domain Description: GIIM Note: maturase Location: 2679159-2679366 bp Feature: domain Description: GIIM Note: maturase Location: 2679159-26793 66 bp Feature: gene Location: 2679692-2680906 bp Ori: EIY63115.1 Feature: domain Description: DUF1016_N Location: 2679752-2680295 bp Feature: domain Description: DUF1016_N Location: 2679752-2680295 bp Feature: domain Description: YhcG_C Location: 2680370-2680844 bp Feature: domain Description: YhcG_C Location: 26803 70-2680844 bp Feature: gene Location: 2681327-2681449 bp Feature: gene Location: 3028728-3030530 bp Ori: EIY63446.1 Feature: domain Description: rpsA Location: 3028797-3030414 bp Feature: domain Description: rpsA Location: 3 028797-3 03 0414 bp Feature: gene Location: 3030627-3036584 bp Ori: EIY63447.1 Feature: domain Description: DUF4011 Location: 3031857-3032370 bp Feature: domain Description: DUF4011 Location: 3 03 1857-3 03 23 70 bp Feature: domain Description: DEXXQc_SF1 Location: 3032709-3033330 bp Feature: domain Description: DEXXQc_SF1 Location: 3 03 2709-3 03 3 3 3 0 bp Feature: domain Description: DEXXQc_SF1 Location: 3034137-3034896 bp Feature: domain Description: DEXXQc_SF1 Location: 3 03 413 7-3 03 4896 bp Feature: domain Description: TIGR00376 Location: 3035025-3035415 bp Feature: domain Description: TIGR003 76 Location: 3 03 5025-3 03 5415 bp Feature: domain Description: MTES_1575 Location: 3035568-3035853 bp Feature: domain Description: MTES_1575 Location: 3 03 5568-3 03 5853 bp Feature: domain Description: DUF3320 Location: 3036093-3036234 bp Feature: domain Description: DUF3 3 20 Location: 3 03 6093 -3 03 623 4 bp Feature: gene Location: 3036586-3037716 bp Ori: EIY63448.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3036907-3037450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 03 6907-3 03 7450 bp Feature: gene Location: 3037922-3040033 bp Feature: gene Location: 3040296-3041120 bp Ori: EIY63450.1 Feature: domain Description: PDDEXK_2 Location: 3040317-3040995 bp Feature: domain Description: PDDEXK_2 Location: 3 0403 17-3 040995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), PHA00430 (tail fiber protein)
DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Avd_like (cd16376), DUF1566 (pfam07603), MutS_I (pfam01624), TMAO_torS (TIGR02956)
DUF3876 (pfam12992), RVT_N (pfam13655), GIIM (pfam08388), DUF4133 (pfam13571), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), RVT-Retrons, REC (smart00448), T4SS-DNA_transf (pfam02534), DUF1016_N (pfam17761)
YhcG_C, rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: JH724231.1 Bacteroides ovatus CL02T12C04 genomic scaffold supercont1.6, whole genome shotgun sequence (294531 bp)
Overview 1 RT 1: 10182-20709 bp Neighborhood of RT #1 [10182, 20849] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF4065 Feature: gene Location: 10182-12071 bp Ori: EIY55644.1 Feature: domain Description: KAP_NTPase Location: 10230-10323 bp Feature: domain Description: KAP_NTPase Location: 10230-10323 bp Feature: domain Description: KAP_NTPase Location: 10593-10866 bp Feature: domain Description: KAP_NTPase Location: 10593-10866 bp Feature: gene Location: 12310-13389 bp Feature: gene Location: 13391-15058 bp Ori: EIY55646.1 Feature: domain Description: RVT_N Location: 13445-13688 bp Feature: domain Description: RVT_N Location: 134 4 5-13688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13733-14381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13733-14 381 bp Feature: domain Description: GIIM Note: maturase Location: 14435-14666 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 35-14 666 bp Feature: gene Location: 15715-19752 bp Ori: EIY55647.1 Feature: domain Description: N6_Mtase Location: 16207-16621 bp Feature: domain Description: N6_Mtase Location: 16207-16621 bp Feature: domain Description: COG4646 Location: 17407-19147 bp Feature: domain Description: COG4 64 6 Location: 174 07-1914 7 bp Feature: gene Location: 20292-20849 bp Ori: EIY55648.1 Feature: domain Description: DUF4065 Location: 20382-20709 bp Feature: domain Description: DUF4 065 Location: 20382-20709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF4065 (pfam13274)