myRT

myRT report for GCA_000273215.1_Bact_ovat_CL03T12C18_V1

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Seq: JH724245.1 Bacteroides ovatus CL03T12C18 genomic scaffold supercont1.5, whole genome shotgun sequence (372952 bp)
Overview 1 RT 1: 824-14363 bp Neighborhood of RT #1 [824, 14363] RVT-DGRs Feature: gene Location: 824-4840 bp Feature: gene Location: 4868-11635 bp Feature: gene Location: 12064-13455 bp Ori: EIY58595.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12364-12958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 2364-1 2958 bp Feature: gene Location: 13442-13942 bp Feature: gene Location: 14121-14363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JH724244.1 Bacteroides ovatus CL03T12C18 genomic scaffold supercont1.4, whole genome shotgun sequence (464278 bp)
Overview 1 RT 1: 441168-443895 bp Neighborhood of RT #1 [441168, 443895] RVT-DGRs Feature: gene Location: 441168-441515 bp Feature: gene Location: 441700-441876 bp Feature: gene Location: 441896-442711 bp Ori: EIY58937.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 442229-442553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 442 2 2 9-442 553 bp Feature: gene Location: 442980-443117 bp Feature: gene Location: 443339-443895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JH724241.1 Bacteroides ovatus CL03T12C18 genomic scaffold supercont1.1, whole genome shotgun sequence (3664698 bp)
Overview 1 RT 1: 537683-549054 bp 2 RT 2: 566384-572672 bp 3 RT 3: 2679191-2691467 bp 4 RT 4: 3296379-3303227 bp 5 RT 5: 3305533-3312839 bp Neighborhood of RT #1 [537683, 549122] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM PRK13351 Neighborhood of RT #2 [566384, 572797] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 SesA Neighborhood of RT #3 [2679191, 2691583] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #4 [3296379, 3303247] DUF3873 RVT-AbiP2 DUF3872 TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Neighborhood of RT #5 [3305533, 3312844] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4134 Feature: gene Location: 537683-538270 bp Ori: EIY71949.1 Feature: domain Description: DUF1896 Location: 537848-538268 bp Feature: domain Description: DUF1896 Location: 53 7848-53 8268 bp Feature: gene Location: 538260-542948 bp Ori: EIY71950.1 Feature: domain Description: N6_Mtase Location: 538572-539175 bp Feature: domain Description: N6_Mtase Location: 53 8572-53 9175 bp Feature: domain Description: COG4646 Location: 540504-542565 bp Feature: domain Description: COG4646 Location: 540504-542565 bp Feature: gene Location: 543605-545272 bp Ori: EIY71951.1 Feature: domain Description: RVT_N Location: 543659-543902 bp Feature: domain Description: RVT_N Location: 543 659-543 902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543947-544595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543 947-544595 bp Feature: domain Description: GIIM Note: maturase Location: 544649-544880 bp Feature: domain Description: GIIM Note: maturase Location: 544649-544880 bp Feature: gene Location: 545256-546539 bp Feature: gene Location: 547197-549122 bp Ori: EIY71953.1 Feature: domain Description: PRK13351 Location: 547200-549054 bp Feature: domain Description: PRK13 3 51 Location: 547200-549054 bp Feature: gene Location: 566384-566716 bp Ori: EIY71968.1 Feature: domain Description: DUF4133 Location: 566402-566672 bp Feature: domain Description: DUF413 3 Location: 566402-566672 bp Feature: gene Location: 566713-569112 bp Ori: EIY71969.1 Feature: domain Description: Bac_Flav_CT_G Location: 566716-569104 bp Feature: domain Description: Bac_Flav_CT_G Location: 566716-569104 bp Feature: gene Location: 569680-571503 bp Ori: EIY71970.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569944-570766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569944-570766 bp Feature: domain Description: Intron_maturas2 Location: 570940-571180 bp Feature: domain Description: Intron_maturas2 Location: 570940-571180 bp Feature: domain Description: HNHc Note: nucleases Location: 571294-571465 bp Feature: domain Description: HNHc Note: nucleases Location: 571294-571465 bp Feature: gene Location: 571764-572144 bp Ori: EIY71971.1 Feature: domain Description: DUF3876 Location: 571845-572109 bp Feature: domain Description: DUF3 876 Location: 571845-572109 bp Feature: gene Location: 572168-572797 bp Ori: EIY71972.1 Feature: domain Description: DUF4141 Location: 572180-572336 bp Feature: domain Description: DUF4141 Location: 572180-5723 3 6 bp Feature: domain Description: SesA Location: 572342-572672 bp Feature: domain Description: SesA Location: 5723 42-572672 bp Feature: gene Location: 2679191-2680015 bp Ori: EIY67428.1 Feature: domain Description: PDDEXK_2 Location: 2679212-2679890 bp Feature: domain Description: PDDEXK_2 Location: 2679212-2679890 bp Feature: gene Location: 2680278-2682389 bp Feature: gene Location: 2682595-2683725 bp Ori: EIY67430.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2682916-2683459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2682916-2683 459 bp Feature: gene Location: 2683727-2689684 bp Ori: EIY67431.1 Feature: domain Description: DUF4011 Location: 2684957-2685470 bp Feature: domain Description: DUF4011 Location: 2684957-2685470 bp Feature: domain Description: DEXXQc_SF1 Location: 2685809-2686775 bp Feature: domain Description: DEXXQc_SF1 Location: 2685809-2686775 bp Feature: domain Description: DEXXQc_SF1 Location: 2687237-2687996 bp Feature: domain Description: DEXXQc_SF1 Location: 268723 7-2687996 bp Feature: domain Description: TIGR00376 Location: 2688128-2688515 bp Feature: domain Description: TIGR003 76 Location: 2688128-2688515 bp Feature: domain Description: MTES_1575 Location: 2688668-2688953 bp Feature: domain Description: MTES_1575 Location: 2688668-2688953 bp Feature: domain Description: DUF3320 Location: 2689193-2689334 bp Feature: domain Description: DUF3 3 20 Location: 2689193 -26893 3 4 bp Feature: gene Location: 2689781-2691583 bp Ori: EIY67432.1 Feature: domain Description: rpsA Location: 2689850-2691467 bp Feature: domain Description: rpsA Location: 2689850-2691467 bp Feature: gene Location: 3296379-3296597 bp Ori: EIY65775.1 Feature: domain Description: DUF3873 Location: 3296388-3296583 bp Feature: domain Description: DUF3 873 Location: 3 2963 88-3 296583 bp Feature: gene Location: 3296613-3297095 bp Feature: gene Location: 3297225-3298730 bp Ori: EIY65777.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3297654-3298107 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 297654-3 298107 bp Feature: gene Location: 3298781-3299215 bp Ori: EIY65778.1 Feature: domain Description: DUF3872 Location: 3298805-3299198 bp Feature: domain Description: DUF3 872 Location: 3 298805-3 299198 bp Feature: gene Location: 3299241-3299822 bp Ori: EIY65779.1 Feature: domain Description: TraO Location: 3299319-3299817 bp Feature: domain Description: TraO Location: 3 2993 19-3 299817 bp Feature: gene Location: 3299826-3300707 bp Ori: EIY65780.1 Feature: domain Description: Bac_Flav_CT_N Location: 3299949-3300687 bp Feature: domain Description: Bac_Flav_CT_N Location: 3 299949-3 3 00687 bp Feature: gene Location: 3300697-3302505 bp Ori: EIY65781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300961-3301783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 00961-3 3 01783 bp Feature: domain Description: Intron_maturas2 Location: 3301942-3302164 bp Feature: domain Description: Intron_maturas2 Location: 3 3 01942-3 3 02164 bp Feature: domain Description: HNHc Note: nucleases Location: 3302338-3302479 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 023 3 8-3 3 02479 bp Feature: gene Location: 3302532-3303008 bp Feature: gene Location: 3303047-3303247 bp Ori: EIY65783.1 Feature: domain Description: Bac_Flav_CT_N Location: 3303050-3303227 bp Feature: domain Description: Bac_Flav_CT_N Location: 3 3 03 050-3 3 03 227 bp Feature: gene Location: 3305533-3306528 bp Ori: EIY65787.1 Feature: domain Description: Bac_Flav_CT_J Location: 3305554-3306517 bp Feature: domain Description: Bac_Flav_CT_J Location: 3 3 05554-3 3 06517 bp Feature: gene Location: 3306548-3307174 bp Ori: EIY65788.1 Feature: domain Description: DUF4141 Location: 3306560-3306713 bp Feature: domain Description: DUF4141 Location: 3 3 06560-3 3 06713 bp Feature: gene Location: 3307418-3309241 bp Ori: EIY65789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3307682-3308504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 07682-3 3 08504 bp Feature: domain Description: Intron_maturas2 Location: 3308678-3308918 bp Feature: domain Description: Intron_maturas2 Location: 3 3 08678-3 3 08918 bp Feature: domain Description: HNHc Note: nucleases Location: 3309032-3309203 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 0903 2-3 3 09203 bp Feature: gene Location: 3309809-3312388 bp Ori: EIY65790.1 Feature: domain Description: Bac_Flav_CT_G Location: 3309995-3312380 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 3 09995-3 3 123 80 bp Feature: gene Location: 3312548-3312844 bp Ori: EIY65791.1 Feature: domain Description: DUF4134 Location: 3312566-3312839 bp Feature: domain Description: DUF413 4 Location: 3 3 12566-3 3 1283 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13351 (elongation factor G-like protein), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348)
HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605), SesA (pfam17107), PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741)
DUF3320 (pfam11784), rpsA (TIGR00717), DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), Bac_Flav_CT_J (TIGR03782), DUF4134 (pfam13572)

Seq: JH724242.1 Bacteroides ovatus CL03T12C18 genomic scaffold supercont1.2, whole genome shotgun sequence (873087 bp)
Overview 1 RT 1: 308273-311470 bp 2 RT 2: 530384-541729 bp 3 RT 3: 865040-873087 bp Neighborhood of RT #1 [308273, 311470] Gp49 HTH_XRE RVT-DGRs Neighborhood of RT #2 [530384, 541767] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #3 [865040, 873087] RVT-DGRs Feature: gene Location: 308273-308617 bp Ori: EIY64259.1 Feature: domain Description: Gp49 Location: 308327-308588 bp Feature: domain Description: Gp4 9 Location: 308327-308588 bp Feature: gene Location: 308622-308933 bp Ori: EIY64260.1 Feature: domain Description: HTH_XRE Location: 308736-308892 bp Feature: domain Description: HTH_XRE Location: 308736-308892 bp Feature: gene Location: 309186-310676 bp Ori: EIY64261.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 309579-310176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 309579-310176 bp Feature: gene Location: 310745-311227 bp Feature: gene Location: 311234-311470 bp Feature: gene Location: 530384-531550 bp Feature: gene Location: 531560-538348 bp Ori: EIY63604.1 Feature: domain Description: Laminin_G_3 Location: 533996-534377 bp Feature: domain Description: Laminin_G_3 Location: 533996-534 377 bp Feature: domain Description: pfam08757 Location: 535172-535496 bp Feature: domain Description: pfam08757 Location: 535172-5354 96 bp Feature: domain Description: LRR_AMN1 Location: 536108-536552 bp Feature: domain Description: LRR_AMN1 Location: 536108-536552 bp Feature: gene Location: 538781-540076 bp Ori: EIY63605.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 538997-539588 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 538997-539588 bp Feature: gene Location: 540078-540572 bp Feature: gene Location: 540622-541767 bp Ori: EIY63607.1 Feature: domain Description: Arm-DNA-bind_5 Location: 540646-540892 bp Feature: domain Description: Arm-DNA-bind_5 Location: 54 064 6-54 0892 bp Feature: domain Description: Phage_int_SAM_5 Location: 540931-541216 bp Feature: domain Description: Phage_int_SAM_5 Location: 54 0931-54 1216 bp Feature: domain Description: INTN1_C_like Location: 541255-541729 bp Feature: domain Description: INTN1_C_like Location: 54 1255-54 1729 bp Feature: gene Location: 865040-865282 bp Feature: gene Location: 865462-865947 bp Feature: gene Location: 865944-867248 bp Ori: EIY62977.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 866157-866751 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 866157-866751 bp Feature: gene Location: 867574-867768 bp Feature: gene Location: 867765-873087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: JH724243.1 Bacteroides ovatus CL03T12C18 genomic scaffold supercont1.3, whole genome shotgun sequence (717826 bp)
Overview 1 RT 1: 202551-208763 bp 2 RT 2: 212525-216526 bp Neighborhood of RT #1 [202551, 209224] DUF4134 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Neighborhood of RT #2 [212525, 216531] Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N TraO Feature: gene Location: 202551-202847 bp Ori: EIY62710.1 Feature: domain Description: DUF4134 Location: 202569-202842 bp Feature: domain Description: DUF4134 Location: 2025 69-202842 bp Feature: gene Location: 203217-205613 bp Ori: EIY62711.1 Feature: domain Description: Bac_Flav_CT_G Location: 203220-205605 bp Feature: domain Description: Bac_Flav_CT_G Location: 203220-205 605 bp Feature: gene Location: 206181-208004 bp Ori: EIY62712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206445-207267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206445 -207267 bp Feature: domain Description: Intron_maturas2 Location: 207441-207681 bp Feature: domain Description: Intron_maturas2 Location: 207441-207681 bp Feature: domain Description: HNHc Note: nucleases Location: 207795-207966 bp Feature: domain Description: HNHc Note: nucleases Location: 207795 -207966 bp Feature: gene Location: 208248-208598 bp Ori: EIY62713.1 Feature: domain Description: DUF3876 Location: 208305-208572 bp Feature: domain Description: DUF3876 Location: 208305 -2085 72 bp Feature: gene Location: 208619-209224 bp Ori: EIY62714.1 Feature: domain Description: DUF4141 Location: 208622-208763 bp Feature: domain Description: DUF4141 Location: 208622-208763 bp Feature: gene Location: 212525-212725 bp Ori: EIY62719.1 Feature: domain Description: Bac_Flav_CT_N Location: 212528-212705 bp Feature: domain Description: Bac_Flav_CT_N Location: 2125 28-212705 bp Feature: gene Location: 212764-213240 bp Feature: gene Location: 213267-215075 bp Ori: EIY62721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213531-214353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2135 31-21435 3 bp Feature: domain Description: Intron_maturas2 Location: 214512-214734 bp Feature: domain Description: Intron_maturas2 Location: 2145 12-214734 bp Feature: domain Description: HNHc Note: nucleases Location: 214908-215049 bp Feature: domain Description: HNHc Note: nucleases Location: 214908-215 049 bp Feature: gene Location: 215065-215946 bp Ori: EIY62722.1 Feature: domain Description: Bac_Flav_CT_N Location: 215188-215926 bp Feature: domain Description: Bac_Flav_CT_N Location: 215 188-215 926 bp Feature: gene Location: 215950-216531 bp Ori: EIY62723.1 Feature: domain Description: TraO Location: 216028-216526 bp Feature: domain Description: TraO Location: 216028-2165 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605), Bac_Flav_CT_N (TIGR03780), TraO (pfam10626)