myRT

myRT report for GCA_000273235.1_Bact_saly_CL02T12C01_V1

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Seq: JH724309.1 Bacteroides salyersiae CL02T12C01 genomic scaffold supercont1.3, whole genome shotgun sequence (932218 bp)
Overview 1 RT 1: 564366-567849 bp 2 RT 2: 623770-634297 bp Neighborhood of RT #1 [564366, 567923] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Neighborhood of RT #2 [623770, 634437] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF4065 Feature: gene Location: 564366-564689 bp Ori: EIY57856.1 Feature: domain Description: DUF4134 Location: 564390-564675 bp Feature: domain Description: DUF41 34 Location: 564390-564675 bp Feature: gene Location: 564754-565044 bp Ori: EIY57857.1 Feature: domain Description: DUF4134 Location: 564829-565027 bp Feature: domain Description: DUF41 34 Location: 564829-565027 bp Feature: gene Location: 565586-567397 bp Ori: EIY57858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565850-566672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565850-566672 bp Feature: domain Description: Intron_maturas2 Location: 566861-567071 bp Feature: domain Description: Intron_maturas2 Location: 566861 -567071 bp Feature: domain Description: HNHc Note: nucleases Location: 567221-567326 bp Feature: domain Description: HNHc Note: nucleases Location: 567221 -567326 bp Feature: gene Location: 567422-567616 bp Ori: EIY57859.1 Feature: domain Description: DUF4134 Location: 567512-567602 bp Feature: domain Description: DUF41 34 Location: 56751 2-567602 bp Feature: gene Location: 567630-567923 bp Ori: EIY57860.1 Feature: domain Description: DUF4133 Location: 567669-567849 bp Feature: domain Description: DUF41 33 Location: 567669-567849 bp Feature: gene Location: 623770-625659 bp Ori: EIY57914.1 Feature: domain Description: KAP_NTPase Location: 623818-623911 bp Feature: domain Description: KAP_NTPase Location: 62381 8-62391 1 bp Feature: domain Description: KAP_NTPase Location: 624181-624454 bp Feature: domain Description: KAP_NTPase Location: 6241 81 -624454 bp Feature: gene Location: 625898-626977 bp Feature: gene Location: 626979-628646 bp Ori: EIY57916.1 Feature: domain Description: RVT_N Location: 627033-627276 bp Feature: domain Description: RVT_N Location: 627033-627276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627321-627969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627321 -627969 bp Feature: domain Description: GIIM Note: maturase Location: 628023-628254 bp Feature: domain Description: GIIM Note: maturase Location: 628023-628254 bp Feature: gene Location: 629303-633340 bp Ori: EIY57917.1 Feature: domain Description: N6_Mtase Location: 629795-630209 bp Feature: domain Description: N6_Mtase Location: 629795-630209 bp Feature: domain Description: COG4646 Location: 630995-632735 bp Feature: domain Description: COG4646 Location: 630995-632735 bp Feature: gene Location: 633880-634437 bp Ori: EIY57918.1 Feature: domain Description: DUF4065 Location: 633970-634297 bp Feature: domain Description: DUF4065 Location: 633970-634297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), KAP_NTPase (pfam07693), RVT_N (pfam13655), GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
DUF4065 (pfam13274)

Seq: JH724307.1 Bacteroides salyersiae CL02T12C01 genomic scaffold supercont1.1, whole genome shotgun sequence (2969592 bp)
Overview 1 RT 1: 8737-15381 bp 2 RT 2: 249096-260483 bp 3 RT 3: 339121-345453 bp 4 RT 4: 1305387-1308819 bp 5 RT 5: 2577952-2584952 bp 6 RT 6: 2603480-2614917 bp Neighborhood of RT #1 [8737, 15842] DUF4134 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Neighborhood of RT #2 [249096, 260483] XerC RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Neighborhood of RT #3 [339121, 345453] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #4 [1305387, 1308896] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Neighborhood of RT #5 [2577952, 2584952] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Neighborhood of RT #6 [2603480, 2614919] PRK13351 Spc7 RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Feature: gene Location: 8737-9366 bp Feature: gene Location: 9537-9833 bp Ori: EIY71309.1 Feature: domain Description: DUF4134 Location: 9555-9828 bp Feature: domain Description: DUF4134 Location: 9555-982 8 bp Feature: gene Location: 10485-12302 bp Ori: EIY71310.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10749-11571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10749-11571 bp Feature: domain Description: Intron_maturas2 Location: 11646-11973 bp Feature: domain Description: Intron_maturas2 Location: 11646-11973 bp Feature: domain Description: HNHc Note: nucleases Location: 12126-12276 bp Feature: domain Description: HNHc Note: nucleases Location: 12 12 6-12 2 76 bp Feature: gene Location: 12691-15204 bp Ori: EIY71311.1 Feature: domain Description: Bac_Flav_CT_G Location: 12694-15178 bp Feature: domain Description: Bac_Flav_CT_G Location: 12 694-15178 bp Feature: gene Location: 15216-15842 bp Ori: EIY71312.1 Feature: domain Description: DUF4141 Location: 15228-15381 bp Feature: domain Description: DUF4141 Location: 152 2 8-15381 bp Feature: gene Location: 249096-250262 bp Ori: EIY70873.1 Feature: domain Description: XerC Location: 249396-250206 bp Feature: domain Description: XerC Location: 2 49396-2 502 06 bp Feature: gene Location: 250303-250797 bp Feature: gene Location: 250799-252094 bp Ori: EIY70875.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251015-251606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 51015-2 51606 bp Feature: gene Location: 252528-259316 bp Ori: EIY70876.1 Feature: domain Description: Laminin_G_3 Location: 254964-255345 bp Feature: domain Description: Laminin_G_3 Location: 2 54964-2 55345 bp Feature: domain Description: CotH Location: 255609-256653 bp Feature: domain Description: CotH Location: 2 55609-2 56653 bp Feature: domain Description: LRR_AMN1 Location: 257070-257532 bp Feature: domain Description: LRR_AMN1 Location: 2 57070-2 57532 bp Feature: gene Location: 259326-260483 bp Feature: gene Location: 339121-340188 bp Ori: EIY70958.1 Feature: domain Description: AAA_25 Location: 339256-339718 bp Feature: domain Description: AAA_2 5 Location: 3392 56-339718 bp Feature: gene Location: 340400-340582 bp Feature: gene Location: 341130-342938 bp Ori: EIY70960.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341394-342216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341394-342 2 16 bp Feature: domain Description: Intron_maturas2 Location: 342285-342594 bp Feature: domain Description: Intron_maturas2 Location: 342 2 85-342 594 bp Feature: gene Location: 342943-343839 bp Ori: EIY70961.1 Feature: domain Description: Toprim_2 Location: 343462-343750 bp Feature: domain Description: Toprim_2 Location: 343462 -343750 bp Feature: gene Location: 344050-345453 bp Feature: gene Location: 1305387-1305692 bp Feature: gene Location: 1305761-1306015 bp Ori: EIY68068.1 Feature: domain Description: DUF4134 Location: 1305797-1305998 bp Feature: domain Description: DUF4134 Location: 1305797-1305998 bp Feature: gene Location: 1306557-1308368 bp Ori: EIY68069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306821-1307643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130682 1-1307643 bp Feature: domain Description: Intron_maturas2 Location: 1307832-1308042 bp Feature: domain Description: Intron_maturas2 Location: 1307832 -1308042 bp Feature: domain Description: HNHc Note: nucleases Location: 1308192-1308297 bp Feature: domain Description: HNHc Note: nucleases Location: 1308192 -13082 97 bp Feature: gene Location: 1308393-1308587 bp Ori: EIY68070.1 Feature: domain Description: DUF4134 Location: 1308483-1308573 bp Feature: domain Description: DUF4134 Location: 1308483-1308573 bp Feature: gene Location: 1308600-1308896 bp Ori: EIY68071.1 Feature: domain Description: DUF4133 Location: 1308642-1308819 bp Feature: domain Description: DUF4133 Location: 1308642 -1308819 bp Feature: gene Location: 2577952-2578332 bp Ori: EIY64853.1 Feature: domain Description: DUF3876 Location: 2578033-2578297 bp Feature: domain Description: DUF3876 Location: 2 578033-2 5782 97 bp Feature: gene Location: 2578373-2580877 bp Ori: EIY64854.1 Feature: domain Description: Bac_Flav_CT_G Location: 2578376-2580860 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 578376-2 580860 bp Feature: gene Location: 2581263-2583080 bp Ori: EIY64855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581527-2582349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58152 7-2 582 349 bp Feature: domain Description: Intron_maturas2 Location: 2582424-2582751 bp Feature: domain Description: Intron_maturas2 Location: 2 582 42 4-2 582 751 bp Feature: domain Description: HNHc Note: nucleases Location: 2582904-2583054 bp Feature: domain Description: HNHc Note: nucleases Location: 2 582 904-2 583054 bp Feature: gene Location: 2583705-2584022 bp Ori: EIY64856.1 Feature: domain Description: DUF4134 Location: 2583750-2584017 bp Feature: domain Description: DUF4134 Location: 2 583750-2 584017 bp Feature: gene Location: 2584224-2584952 bp Feature: gene Location: 2603480-2605405 bp Ori: EIY64726.1 Feature: domain Description: PRK13351 Location: 2603483-2605337 bp Feature: domain Description: PRK13351 Location: 2 603483-2 605337 bp Feature: gene Location: 2606063-2607328 bp Ori: EIY64727.1 Feature: domain Description: Spc7 Location: 2606939-2607206 bp Feature: domain Description: Spc7 Location: 2 606939-2 6072 06 bp Feature: gene Location: 2607330-2608997 bp Ori: EIY64728.1 Feature: domain Description: RVT_N Location: 2607384-2607627 bp Feature: domain Description: RVT_N Location: 2 607384-2 60762 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607672-2608320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 607672 -2 60832 0 bp Feature: domain Description: GIIM Note: maturase Location: 2608374-2608605 bp Feature: domain Description: GIIM Note: maturase Location: 2 608374-2 608605 bp Feature: gene Location: 2609654-2614342 bp Ori: EIY64729.1 Feature: domain Description: N6_Mtase Location: 2609966-2610569 bp Feature: domain Description: N6_Mtase Location: 2 609966-2 610569 bp Feature: domain Description: COG4646 Location: 2611898-2613959 bp Feature: domain Description: COG4646 Location: 2 611898-2 613959 bp Feature: gene Location: 2614332-2614919 bp Ori: EIY64730.1 Feature: domain Description: DUF1896 Location: 2614497-2614917 bp Feature: domain Description: DUF1896 Location: 2 614497-2 614917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605), XerC (COG4973), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757)
LRR_AMN1 (sd00034), AAA_25 (pfam13481), Toprim_2 (pfam13155), DUF4133 (pfam13571), DUF3876 (pfam12992), PRK13351 (elongation factor G-like protein), Spc7 (smart00787), RVT_N (pfam13655), GIIM (pfam08388), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: JH724308.1 Bacteroides salyersiae CL02T12C01 genomic scaffold supercont1.2, whole genome shotgun sequence (1291647 bp)
Overview 1 RT 1: 999779-1003567 bp Neighborhood of RT #1 [999779, 1003605] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 999779-1000147 bp Feature: gene Location: 1000137-1001306 bp Feature: gene Location: 1001332-1003605 bp Ori: EIY61219.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1001542-1002145 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1001542-1002145 bp Feature: domain Description: Cas1_I-II-III Location: 1002607-1003567 bp Feature: domain Description: Cas1_I-II-III Location: 1002607-1003 567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)