myRT

myRT report for GCA_000273275.1_Bact_unif_CL03T12C37_V1

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Seq: JH724269.1 Bacteroides uniformis CL03T12C37 genomic scaffold supercont1.2, whole genome shotgun sequence (1365388 bp)
Overview 1 RT 1: 129444-135472 bp Neighborhood of RT #1 [129444, 135472] MACS_AAE_MA_like PagL RVT-G2L Feature: gene Location: 129444-131099 bp Ori: EIY76548.1 Feature: domain Description: MACS_AAE_MA_like Location: 129486-131091 bp Feature: domain Description: MACS_AAE_MA_like Location: 1 29486-1 31 091 bp Feature: gene Location: 131331-132569 bp Ori: EIY76549.1 Feature: domain Description: PagL Location: 131688-131991 bp Feature: domain Description: PagL Location: 1 31 688-1 31 991 bp Feature: gene Location: 133092-134366 bp Ori: EIY76550.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 133296-133965 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 1 33296-1 33965 bp Feature: gene Location: 134609-134947 bp Feature: gene Location: 135281-135472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MACS_AAE_MA_like (cd05970), PagL (pfam09411), RVT-G2L

Seq: JH724268.1 Bacteroides uniformis CL03T12C37 genomic scaffold supercont1.1, whole genome shotgun sequence (2904553 bp)
Overview 1 RT 1: 730714-734700 bp 2 RT 2: 795185-801150 bp 3 RT 3: 1045763-1050473 bp 4 RT 4: 1070270-1076263 bp 5 RT 5: 1079521-1084491 bp 6 RT 6: 2022388-2027644 bp Neighborhood of RT #1 [730714, 734720] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Neighborhood of RT #2 [795185, 801833] RteC TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Neighborhood of RT #3 [1045763, 1050514] TMAO_torS MutS_I RVT-DGRs Avd_like Neighborhood of RT #4 [1070270, 1076478] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Neighborhood of RT #5 [1079521, 1084556] Hypoth_Ymh RVT-AbiP2 COG1373 DDE_Tnp_1 Neighborhood of RT #6 [2022388, 2027644] DUF3991 Toprim_2 MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 730714-731295 bp Ori: EIY82986.1 Feature: domain Description: TraO Location: 730792-731290 bp Feature: domain Description: TraO Location: 730792 -7312 90 bp Feature: gene Location: 731299-732180 bp Ori: EIY82987.1 Feature: domain Description: Bac_Flav_CT_N Location: 731422-732160 bp Feature: domain Description: Bac_Flav_CT_N Location: 73142 2 -732 160 bp Feature: gene Location: 732170-733978 bp Ori: EIY82988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732434-733256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732 434-7332 56 bp Feature: domain Description: Intron_maturas2 Location: 733415-733637 bp Feature: domain Description: Intron_maturas2 Location: 733415-733637 bp Feature: domain Description: HNHc Note: nucleases Location: 733811-733952 bp Feature: domain Description: HNHc Note: nucleases Location: 733811-733952 bp Feature: gene Location: 734005-734481 bp Feature: gene Location: 734520-734720 bp Ori: EIY82990.1 Feature: domain Description: Bac_Flav_CT_N Location: 734523-734700 bp Feature: domain Description: Bac_Flav_CT_N Location: 73452 3-734700 bp Feature: gene Location: 795185-796027 bp Ori: EIY83052.1 Feature: domain Description: RteC Location: 795350-796004 bp Feature: domain Description: RteC Location: 795350-796004 bp Feature: gene Location: 796110-797282 bp Ori: EIY83053.1 Feature: domain Description: TraG-D_C Location: 796656-796986 bp Feature: domain Description: TraG-D_C Location: 796656-796986 bp Feature: gene Location: 797323-798975 bp Ori: EIY83054.1 Feature: domain Description: RVT_N Location: 797377-797620 bp Feature: domain Description: RVT_N Location: 797377-79762 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797665-798313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797665-798313 bp Feature: domain Description: GIIM Note: maturase Location: 798367-798598 bp Feature: domain Description: GIIM Note: maturase Location: 798367-798598 bp Feature: gene Location: 799612-800538 bp Ori: EIY83055.1 Feature: domain Description: YWFCY Location: 799621-799798 bp Feature: domain Description: YWFCY Location: 79962 1-799798 bp Feature: gene Location: 800565-801833 bp Ori: EIY83056.1 Feature: domain Description: Relaxase Location: 800751-801150 bp Feature: domain Description: Relaxase Location: 800751-801150 bp Feature: gene Location: 1045763-1048054 bp Ori: EIY81637.1 Feature: domain Description: TMAO_torS Location: 1046624-1047713 bp Feature: domain Description: TMAO_torS Location: 104662 4-1047713 bp Feature: gene Location: 1048116-1048592 bp Ori: EIY81638.1 Feature: domain Description: MutS_I Location: 1048167-1048362 bp Feature: domain Description: MutS_I Location: 1048167-1048362 bp Feature: gene Location: 1048589-1049629 bp Ori: EIY81639.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1048595-1049285 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1048595-10492 85 bp Feature: gene Location: 1049626-1049850 bp Feature: gene Location: 1050140-1050514 bp Ori: EIY81641.1 Feature: domain Description: Avd_like Location: 1050167-1050473 bp Feature: domain Description: Avd_like Location: 1050167-1050473 bp Feature: gene Location: 1070270-1070533 bp Feature: gene Location: 1070750-1071937 bp Ori: EIY81666.1 Feature: domain Description: TraG-D_C Location: 1071296-1071629 bp Feature: domain Description: TraG-D_C Location: 10712 96-107162 9 bp Feature: gene Location: 1071978-1073630 bp Ori: EIY81667.1 Feature: domain Description: RVT_N Location: 1072032-1072275 bp Feature: domain Description: RVT_N Location: 1072 032 -1072 2 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072320-1072968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072 32 0-1072 968 bp Feature: domain Description: GIIM Note: maturase Location: 1073022-1073253 bp Feature: domain Description: GIIM Note: maturase Location: 107302 2 -10732 53 bp Feature: gene Location: 1074267-1075190 bp Ori: EIY81668.1 Feature: domain Description: YWFCY Location: 1074273-1074450 bp Feature: domain Description: YWFCY Location: 10742 73-1074450 bp Feature: gene Location: 1075225-1076478 bp Ori: EIY81669.1 Feature: domain Description: Relaxase Location: 1075408-1075774 bp Feature: domain Description: Relaxase Location: 1075408-1075774 bp Feature: domain Description: Relaxase Location: 1076032-1076263 bp Feature: domain Description: Relaxase Location: 1076032 -10762 63 bp Feature: gene Location: 1079521-1079787 bp Feature: gene Location: 1079860-1080663 bp Ori: EIY81675.1 Feature: domain Description: Hypoth_Ymh Location: 1080286-1080640 bp Feature: domain Description: Hypoth_Ymh Location: 10802 86-1080640 bp Feature: gene Location: 1080679-1082202 bp Ori: EIY81676.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1081108-1081564 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1081108-1081564 bp Feature: gene Location: 1082261-1083517 bp Ori: EIY81677.1 Feature: domain Description: COG1373 Location: 1082264-1083497 bp Feature: domain Description: COG1373 Location: 1082 2 64-1083497 bp Feature: gene Location: 1083651-1084556 bp Ori: EIY81678.1 Feature: domain Description: DDE_Tnp_1 Location: 1083972-1084491 bp Feature: domain Description: DDE_Tnp_1 Location: 1083972 -1084491 bp Feature: gene Location: 2022388-2023575 bp Ori: EIY79091.1 Feature: domain Description: DUF3991 Location: 2022838-2023048 bp Feature: domain Description: DUF3991 Location: 2 02 2 838-2 02 3048 bp Feature: domain Description: Toprim_2 Location: 2023093-2023303 bp Feature: domain Description: Toprim_2 Location: 2 02 3093-2 02 3303 bp Feature: gene Location: 2023605-2024585 bp Ori: EIY79092.1 Feature: domain Description: MPTase-PolyVal Location: 2023860-2024214 bp Feature: domain Description: MPTase-PolyVal Location: 2 02 3860-2 02 42 14 bp Feature: gene Location: 2024599-2026410 bp Ori: EIY79093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024863-2025685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 4863-2 02 5685 bp Feature: domain Description: Intron_maturas2 Location: 2025829-2026063 bp Feature: domain Description: Intron_maturas2 Location: 2 02 582 9-2 02 6063 bp Feature: gene Location: 2026963-2027430 bp Ori: EIY79094.1 Feature: domain Description: DUF1738 Location: 2027011-2027398 bp Feature: domain Description: DUF1738 Location: 2 02 7011-2 02 7398 bp Feature: gene Location: 2027414-2027644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RteC (pfam09357), TraG-D_C (pfam12696), RVT_N (pfam13655), GIIM (pfam08388), YWFCY (pfam14293)
Relaxase (pfam03432), TMAO_torS (TIGR02956), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), DDE_Tnp_1 (pfam01609), DUF3991 (pfam13154)
Toprim_2 (pfam13155), MPTase-PolyVal (pfam18818), DUF1738 (pfam08401)