myRT

myRT report for GCA_000273315.1_Bact_xyla_CL03T12C04_V1

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Seq: JH724294.1 Bacteroides xylanisolvens CL03T12C04 genomic scaffold supercont1.1, whole genome shotgun sequence (2579410 bp)
Overview 1 RT 1: 557215-569622 bp 2 RT 2: 1176867-1180853 bp Neighborhood of RT #1 [557215, 569753] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [1176867, 1180873] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Feature: gene Location: 557215-558051 bp Feature: domain Description: PDDEXK_2 Location: 557236-557914 bp Feature: domain Description: PDDEXK_2 Location: 557236-55791 4 bp Feature: gene Location: 558316-560427 bp Feature: gene Location: 560635-561765 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 560956-561499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 560956-561 499 bp Feature: gene Location: 561816-567857 bp Feature: domain Description: DUF4011 Location: 563046-563559 bp Feature: domain Description: DUF401 1 Location: 563046-563559 bp Feature: domain Description: DEXXQc_SF1 Location: 563898-564327 bp Feature: domain Description: DEXXQc_SF1 Location: 563898-564327 bp Feature: domain Description: DEXXQc_SF1 Location: 565326-566085 bp Feature: domain Description: DEXXQc_SF1 Location: 565326-566085 bp Feature: domain Description: SF1_C_Upf1 Location: 566094-566604 bp Feature: domain Description: SF1 _C_Upf1 Location: 566094-566604 bp Feature: domain Description: MTES_1575 Location: 566757-567042 bp Feature: domain Description: MTES_1 575 Location: 566757-567042 bp Feature: domain Description: DUF3320 Location: 567372-567507 bp Feature: domain Description: DUF3320 Location: 567372-567507 bp Feature: gene Location: 567954-569753 bp Feature: domain Description: rpsA Location: 568023-569622 bp Feature: domain Description: rpsA Location: 568023-569622 bp Feature: gene Location: 1176867-1177448 bp Feature: domain Description: TraO Location: 1176945-1177443 bp Feature: domain Description: TraO Location: 1 1 76945-1 1 77443 bp Feature: gene Location: 1177452-1178333 bp Feature: domain Description: Bac_Flav_CT_N Location: 1177575-1178313 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 1 77575-1 1 7831 3 bp Feature: gene Location: 1178323-1180131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178587-1179409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 78587-1 1 79409 bp Feature: domain Description: Intron_maturas2 Location: 1179568-1179790 bp Feature: domain Description: Intron_maturas2 Location: 1 1 79568-1 1 79790 bp Feature: domain Description: HNHc Note: nucleases Location: 1179964-1180105 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 79964-1 1 801 05 bp Feature: gene Location: 1180158-1180634 bp Feature: gene Location: 1180673-1180873 bp Feature: domain Description: Bac_Flav_CT_N Location: 1180676-1180853 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 1 80676-1 1 80853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), TraO (pfam10626), Bac_Flav_CT_N (TIGR03780)
RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JH724296.1 Bacteroides xylanisolvens CL03T12C04 genomic scaffold supercont1.3, whole genome shotgun sequence (644996 bp)
Overview 1 RT 1: 41472-47743 bp 2 RT 2: 524202-529511 bp Neighborhood of RT #1 [41472, 47814] couple_hipA HipA_C RVT-GII GIIM DUF5018 PCMD OMP_b-brl_2 Neighborhood of RT #2 [524202, 533632] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 41472-41798 bp Feature: domain Description: couple_hipA Location: 41481-41775 bp Feature: domain Description: couple_hipA Location: 41481-41775 bp Feature: gene Location: 41801-42736 bp Feature: domain Description: HipA_C Location: 41966-42641 bp Feature: domain Description: HipA_C Location: 41966-42 641 bp Feature: gene Location: 43069-44475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43411-44029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43411-4402 9 bp Feature: domain Description: GIIM Note: maturase Location: 44086-44305 bp Feature: domain Description: GIIM Note: maturase Location: 44086-44305 bp Feature: gene Location: 45872-47011 bp Feature: domain Description: DUF5018 Location: 46061-46262 bp Feature: domain Description: DUF5018 Location: 46061-462 62 bp Feature: domain Description: PCMD Location: 46265-47000 bp Feature: domain Description: PCMD Location: 462 65-47000 bp Feature: gene Location: 47029-47814 bp Feature: domain Description: OMP_b-brl_2 Location: 47095-47743 bp Feature: domain Description: OMP_b-brl_2 Location: 47095-47743 bp Feature: gene Location: 524202-524444 bp Feature: gene Location: 524623-525108 bp Feature: gene Location: 525105-526409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 525318-525993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52 5318-52 5993 bp Feature: gene Location: 526722-526916 bp Feature: gene Location: 526913-533632 bp Feature: domain Description: Laminin_G_3 Location: 528356-528434 bp Feature: domain Description: Laminin_G_3 Location: 52 8356-52 8434 bp Feature: domain Description: Laminin_G_3 Location: 529085-529511 bp Feature: domain Description: Laminin_G_3 Location: 52 9085-52 9511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipA (TIGR03071), HipA_C (pfam07804), RVT-GII, GIIM (pfam08388), DUF5018 (pfam16410), PCMD (pfam13201), OMP_b-brl_2 (pfam13568), RVT-DGRs, Laminin_G_3 (pfam13385)