myRT

myRT report for GCA_000273725.1_Bact_cacc_CL03T12C61_V1

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Seq: JH724080.1 Bacteroides caccae CL03T12C61 genomic scaffold supercont1.2, whole genome shotgun sequence (674235 bp)
Overview 1 RT 1: 272776-277358 bp Neighborhood of RT #1 [272776, 277358] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII matK HNHc Feature: gene Location: 272776-273942 bp Ori: EIY17541.1 Feature: domain Description: Bac_Flav_CT_G Location: 272782-273940 bp Feature: domain Description: Bac_Flav_CT_G Location: 272782-273940 bp Feature: gene Location: 273964-274314 bp Ori: EIY17542.1 Feature: domain Description: Bac_Flav_CT_G Location: 273967-274306 bp Feature: domain Description: Bac_Flav_CT_G Location: 273967-274306 bp Feature: gene Location: 274883-276706 bp Ori: EIY17543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275147-275969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2751 47-275969 bp Feature: domain Description: matK Location: 276143-276371 bp Feature: domain Description: matK Location: 2761 43-276371 bp Feature: domain Description: HNHc Note: nucleases Location: 276497-276668 bp Feature: domain Description: HNHc Note: nucleases Location: 276497-276668 bp Feature: gene Location: 276951-277082 bp Feature: gene Location: 277083-277358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: JH724079.1 Bacteroides caccae CL03T12C61 genomic scaffold supercont1.1, whole genome shotgun sequence (4040007 bp)
Overview 1 RT 1: 565869-571507 bp 2 RT 2: 782721-796540 bp 3 RT 3: 1239012-1245927 bp 4 RT 4: 2171281-2182626 bp 5 RT 5: 2694318-2699800 bp 6 RT 6: 2901084-2907286 bp Neighborhood of RT #1 [565869, 571512] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Neighborhood of RT #2 [782721, 796656] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #3 [1239012, 1246388] DUF4134 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Neighborhood of RT #4 [2171281, 2182664] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #5 [2694318, 2699841] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #6 [2901084, 2907381] BACON RVT-GII GIIM RVT-GII KOG1378 FAD_oxidored Feature: gene Location: 565869-566501 bp Ori: EIY23113.1 Feature: domain Description: DUF4141 Location: 565893-566040 bp Feature: domain Description: DUF4141 Location: 565893-566040 bp Feature: gene Location: 566522-566980 bp Ori: EIY23114.1 Feature: domain Description: Bac_Flav_CT_G Location: 566540-566966 bp Feature: domain Description: Bac_Flav_CT_G Location: 566540-566966 bp Feature: gene Location: 567058-568869 bp Ori: EIY23115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567322-568144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56732 2 -568144 bp Feature: domain Description: Intron_maturas2 Location: 568219-568534 bp Feature: domain Description: Intron_maturas2 Location: 5682 19-568534 bp Feature: domain Description: HNHc Note: nucleases Location: 568690-568840 bp Feature: domain Description: HNHc Note: nucleases Location: 568690-568840 bp Feature: gene Location: 569416-571245 bp Ori: EIY23116.1 Feature: domain Description: Bac_Flav_CT_G Location: 569419-571231 bp Feature: domain Description: Bac_Flav_CT_G Location: 569419-5712 31 bp Feature: gene Location: 571342-571512 bp Ori: EIY23117.1 Feature: domain Description: DUF3875 Location: 571351-571507 bp Feature: domain Description: DUF3875 Location: 571351-571507 bp Feature: gene Location: 782721-784910 bp Ori: EIY22561.1 Feature: domain Description: GlnA3 Location: 782793-784908 bp Feature: domain Description: GlnA3 Location: 782 793-784908 bp Feature: gene Location: 785356-787467 bp Feature: gene Location: 787670-788800 bp Ori: EIY22563.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 787991-788543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 787991-788543 bp Feature: gene Location: 788797-794748 bp Ori: EIY22564.1 Feature: domain Description: DUF4011 Location: 790012-790525 bp Feature: domain Description: DUF4011 Location: 790012 -79052 5 bp Feature: domain Description: DEXXQc_SF1 Location: 790864-791479 bp Feature: domain Description: DEXXQc_SF1 Location: 790864-791479 bp Feature: domain Description: DEXXQc_SF1 Location: 792109-793051 bp Feature: domain Description: DEXXQc_SF1 Location: 792 109-793051 bp Feature: domain Description: TIGR00376 Location: 793180-793573 bp Feature: domain Description: TIGR00376 Location: 793180-793573 bp Feature: domain Description: MTES_1575 Location: 793723-794008 bp Feature: domain Description: MTES_1575 Location: 79372 3-794008 bp Feature: domain Description: DUF3320 Location: 794257-794398 bp Feature: domain Description: DUF332 0 Location: 7942 57-794398 bp Feature: gene Location: 794860-796656 bp Ori: EIY22565.1 Feature: domain Description: rpsA Location: 794926-796540 bp Feature: domain Description: rpsA Location: 79492 6-796540 bp Feature: gene Location: 1239012-1239308 bp Ori: EIY21300.1 Feature: domain Description: DUF4134 Location: 1239030-1239303 bp Feature: domain Description: DUF4134 Location: 12 39030-12 39303 bp Feature: gene Location: 1239639-1242035 bp Ori: EIY21301.1 Feature: domain Description: Bac_Flav_CT_G Location: 1239642-1242024 bp Feature: domain Description: Bac_Flav_CT_G Location: 12 39642 -12 42 02 4 bp Feature: gene Location: 1242604-1244427 bp Ori: EIY21302.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242868-1243690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 868-12 43690 bp Feature: domain Description: Intron_maturas2 Location: 1243864-1244107 bp Feature: domain Description: Intron_maturas2 Location: 12 43864-12 44107 bp Feature: domain Description: HNHc Note: nucleases Location: 1244218-1244389 bp Feature: domain Description: HNHc Note: nucleases Location: 12 442 18-12 44389 bp Feature: gene Location: 1244669-1245718 bp Feature: gene Location: 1245759-1246388 bp Ori: EIY21304.1 Feature: domain Description: DUF4141 Location: 1245771-1245927 bp Feature: domain Description: DUF4141 Location: 12 45771-12 4592 7 bp Feature: gene Location: 2171281-2172447 bp Feature: gene Location: 2172457-2179245 bp Ori: EIY22146.1 Feature: domain Description: Laminin_G_3 Location: 2174893-2175274 bp Feature: domain Description: Laminin_G_3 Location: 2 174893-2 1752 74 bp Feature: domain Description: pfam08757 Location: 2176069-2176393 bp Feature: domain Description: pfam08757 Location: 2 176069-2 176393 bp Feature: domain Description: LRR_AMN1 Location: 2177005-2177449 bp Feature: domain Description: LRR_AMN1 Location: 2 177005-2 177449 bp Feature: gene Location: 2179678-2180973 bp Ori: EIY22147.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2179888-2180566 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 179888-2 180566 bp Feature: gene Location: 2180975-2181469 bp Feature: gene Location: 2181519-2182664 bp Ori: EIY22149.1 Feature: domain Description: Arm-DNA-bind_5 Location: 2181543-2181789 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 181543-2 181789 bp Feature: domain Description: Phage_int_SAM_5 Location: 2181828-2182113 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 18182 8-2 182 113 bp Feature: domain Description: INTN1_C_like Location: 2182152-2182626 bp Feature: domain Description: INTN1_C_like Location: 2 182 152 -2 182 62 6 bp Feature: gene Location: 2694318-2694632 bp Ori: EIY19896.1 Feature: domain Description: DUF3876 Location: 2694372-2694621 bp Feature: domain Description: DUF3876 Location: 2 694372 -2 69462 1 bp Feature: gene Location: 2694647-2696341 bp Ori: EIY19897.1 Feature: domain Description: Bac_Flav_CT_G Location: 2694767-2696333 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 694767-2 696333 bp Feature: gene Location: 2696338-2697999 bp Ori: EIY19898.1 Feature: domain Description: RVT_N Location: 2696392-2696635 bp Feature: domain Description: RVT_N Location: 2 696392 -2 696635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696680-2697328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 696680-2 69732 8 bp Feature: domain Description: GIIM Note: maturase Location: 2697382-2697613 bp Feature: domain Description: GIIM Note: maturase Location: 2 697382 -2 697613 bp Feature: gene Location: 2698583-2699521 bp Ori: EIY19899.1 Feature: domain Description: Bac_Flav_CT_G Location: 2698586-2699507 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 698586-2 699507 bp Feature: gene Location: 2699518-2699841 bp Ori: EIY19900.1 Feature: domain Description: DUF4133 Location: 2699533-2699800 bp Feature: domain Description: DUF4133 Location: 2 699533-2 699800 bp Feature: gene Location: 2901084-2901479 bp Ori: EIY20086.1 Feature: domain Description: BACON Location: 2901189-2901468 bp Feature: domain Description: BACON Location: 2 901189-2 901468 bp Feature: gene Location: 2901830-2902087 bp Feature: gene Location: 2902187-2902705 bp Ori: EIY20088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2902199-2902439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 199-2 902 439 bp Feature: domain Description: GIIM Note: maturase Location: 2902451-2902682 bp Feature: domain Description: GIIM Note: maturase Location: 2 902 451-2 902 682 bp Feature: gene Location: 2902879-2903367 bp Ori: EIY20089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903215-2903353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9032 15-2 903353 bp Feature: gene Location: 2904252-2905421 bp Ori: EIY20090.1 Feature: domain Description: KOG1378 Location: 2904363-2905275 bp Feature: domain Description: KOG1378 Location: 2 904363-2 9052 75 bp Feature: gene Location: 2905513-2907381 bp Ori: EIY20091.1 Feature: domain Description: FAD_oxidored Location: 2906077-2907286 bp Feature: domain Description: FAD_oxidored Location: 2 906077-2 9072 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043)
TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), DUF4134 (pfam13572), Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293)
Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), DUF3876 (pfam12992), RVT_N (pfam13655), GIIM (pfam08388), DUF4133 (pfam13571), BACON (pfam13004), KOG1378 (KOG1378, Purple acid phosphatase ), FAD_oxidored (pfam12831)