myRT

myRT report for GCA_000273785.1_Bact_unif_CL03T00C23_V1

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Seq: JH724260.1 Bacteroides uniformis CL03T00C23 genomic scaffold supercont1.1, whole genome shotgun sequence (4915651 bp)
Overview 1 RT 1: 36096-41131 bp 2 RT 2: 44174-50382 bp 3 RT 3: 70138-74548 bp 4 RT 4: 317538-324163 bp 5 RT 5: 384651-388652 bp 6 RT 6: 2346619-2352303 bp Neighborhood of RT #1 [36096, 41131] DDE_Tnp_1 COG1373 RVT-AbiP2 Hypoth_Ymh Neighborhood of RT #2 [44174, 50382] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #3 [70138, 74889] Avd_like RVT-DGRs MutS_I TMAO_torS Neighborhood of RT #4 [317538, 324186] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C RteC Neighborhood of RT #5 [384651, 388657] Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N TraO Neighborhood of RT #6 [2346619, 2352311] RVT-G2L PagL MACS_AAE_MA_like Feature: gene Location: 36096-37001 bp Ori: EIY82414.1 Feature: domain Description: DDE_Tnp_1 Location: 36417-36936 bp Feature: domain Description: DDE_Tnp_1 Location: 3641 7-36936 bp Feature: gene Location: 37135-38391 bp Ori: EIY82415.1 Feature: domain Description: COG1373 Location: 37138-38371 bp Feature: domain Description: COG1 373 Location: 371 38-38371 bp Feature: gene Location: 38450-39973 bp Ori: EIY82416.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 38879-39335 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 38879-39335 bp Feature: gene Location: 39989-40792 bp Ori: EIY82417.1 Feature: domain Description: Hypoth_Ymh Location: 40415-40769 bp Feature: domain Description: Hypoth_Ymh Location: 4041 5-40769 bp Feature: gene Location: 40865-41131 bp Feature: gene Location: 44174-45427 bp Ori: EIY82423.1 Feature: domain Description: Relaxase Location: 44357-44723 bp Feature: domain Description: Relaxase Location: 44357-44723 bp Feature: domain Description: Relaxase Location: 44981-45212 bp Feature: domain Description: Relaxase Location: 44981 -4521 2 bp Feature: gene Location: 45462-46385 bp Ori: EIY82424.1 Feature: domain Description: YWFCY Location: 45468-45645 bp Feature: domain Description: YWFCY Location: 45468-45645 bp Feature: gene Location: 47022-48674 bp Ori: EIY82425.1 Feature: domain Description: RVT_N Location: 47076-47319 bp Feature: domain Description: RVT_N Location: 47076-4731 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47364-48012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47364-4801 2 bp Feature: domain Description: GIIM Note: maturase Location: 48066-48297 bp Feature: domain Description: GIIM Note: maturase Location: 48066-48297 bp Feature: gene Location: 48679-49902 bp Ori: EIY82426.1 Feature: domain Description: TraG-D_C Location: 49261-49594 bp Feature: domain Description: TraG-D_C Location: 49261 -49594 bp Feature: gene Location: 50119-50382 bp Feature: gene Location: 70138-70512 bp Ori: EIY82451.1 Feature: domain Description: Avd_like Location: 70165-70471 bp Feature: domain Description: Avd_like Location: 701 65-70471 bp Feature: gene Location: 70802-71026 bp Feature: gene Location: 71023-72063 bp Ori: EIY82453.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 71029-71719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 71 029-71 71 9 bp Feature: gene Location: 72060-72536 bp Ori: EIY82454.1 Feature: domain Description: MutS_I Location: 72111-72306 bp Feature: domain Description: MutS_I Location: 721 1 1 -72306 bp Feature: gene Location: 72598-74889 bp Ori: EIY82455.1 Feature: domain Description: TMAO_torS Location: 73459-74548 bp Feature: domain Description: TMAO_torS Location: 73459-74548 bp Feature: gene Location: 317538-318806 bp Ori: EIY81022.1 Feature: domain Description: Relaxase Location: 317724-318123 bp Feature: domain Description: Relaxase Location: 31 7724-31 81 23 bp Feature: gene Location: 318833-319759 bp Ori: EIY81023.1 Feature: domain Description: YWFCY Location: 318842-319019 bp Feature: domain Description: YWFCY Location: 31 8842-31 901 9 bp Feature: gene Location: 320396-322048 bp Ori: EIY81024.1 Feature: domain Description: RVT_N Location: 320450-320693 bp Feature: domain Description: RVT_N Location: 320450-320693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320738-321386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320738-321 386 bp Feature: domain Description: GIIM Note: maturase Location: 321440-321671 bp Feature: domain Description: GIIM Note: maturase Location: 321 440-321 671 bp Feature: gene Location: 322053-323261 bp Ori: EIY81025.1 Feature: domain Description: TraG-D_C Location: 322635-322965 bp Feature: domain Description: TraG-D_C Location: 322635-322965 bp Feature: gene Location: 323344-324186 bp Ori: EIY81026.1 Feature: domain Description: RteC Location: 323509-324163 bp Feature: domain Description: RteC Location: 323509-3241 63 bp Feature: gene Location: 384651-384851 bp Ori: EIY81088.1 Feature: domain Description: Bac_Flav_CT_N Location: 384654-384831 bp Feature: domain Description: Bac_Flav_CT_N Location: 384654-384831 bp Feature: gene Location: 384890-385366 bp Feature: gene Location: 385393-387201 bp Ori: EIY81090.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385657-386479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385657-386479 bp Feature: domain Description: Intron_maturas2 Location: 386638-386860 bp Feature: domain Description: Intron_maturas2 Location: 386638-386860 bp Feature: domain Description: HNHc Note: nucleases Location: 387034-387175 bp Feature: domain Description: HNHc Note: nucleases Location: 387034-3871 75 bp Feature: gene Location: 387191-388072 bp Ori: EIY81091.1 Feature: domain Description: Bac_Flav_CT_N Location: 387314-388052 bp Feature: domain Description: Bac_Flav_CT_N Location: 38731 4-388052 bp Feature: gene Location: 388076-388657 bp Ori: EIY81092.1 Feature: domain Description: TraO Location: 388154-388652 bp Feature: domain Description: TraO Location: 3881 54-388652 bp Feature: gene Location: 2346619-2346777 bp Feature: gene Location: 2346808-2347146 bp Feature: gene Location: 2347389-2348663 bp Ori: EIY76265.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 2347593-2348262 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 2347593-2348262 bp Feature: gene Location: 2349186-2350424 bp Ori: EIY76266.1 Feature: domain Description: PagL Location: 2349543-2349846 bp Feature: domain Description: PagL Location: 2349543-2349846 bp Feature: gene Location: 2350656-2352311 bp Ori: EIY76267.1 Feature: domain Description: MACS_AAE_MA_like Location: 2350698-2352303 bp Feature: domain Description: MACS_AAE_MA_like Location: 2350698-2352303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)
Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), TMAO_torS (TIGR02956), RteC (pfam09357), Bac_Flav_CT_N (TIGR03780), Intron_maturas2 (pfam01348), HNHc (smart00507), TraO (pfam10626), RVT-G2L
PagL (pfam09411), MACS_AAE_MA_like (cd05970)