myRT

myRT report for GCA_000276585.1_ASM27658v1

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Seq: AJXJ01000013.1 Pseudomonas fluorescens NZ011 contig00014_contig_1, whole genome shotgun sequence (29947 bp)
Overview 1 RT 1: 12435-18614 bp Neighborhood of RT #1 [12435, 18634] RVT-G2L4 CadC1 COG3903 TPR COG3903 FixJ Feature: gene Location: 12435-12623 bp Feature: gene Location: 12817-13281 bp Feature: gene Location: 13424-14743 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 13709-14294 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1 3709-1 4294 bp Feature: gene Location: 15026-17929 bp Feature: domain Description: CadC1 Location: 15059-15383 bp Feature: domain Description: CadC1 Location: 1 5059-1 5383 bp Feature: domain Description: COG3903 Location: 15509-16730 bp Feature: domain Description: COG3903 Location: 1 5509-1 6730 bp Feature: domain Description: TPR Location: 16790-17219 bp Feature: domain Description: TPR Location: 1 6790-1 721 9 bp Feature: domain Description: COG3903 Location: 17456-17915 bp Feature: domain Description: COG3903 Location: 1 7456-1 791 5 bp Feature: gene Location: 17972-18634 bp Feature: domain Description: FixJ Location: 18029-18614 bp Feature: domain Description: FixJ Location: 1 8029-1 861 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, CadC1 (COG3710), COG3903 (Predicted ATPase ), TPR (smart00028), FixJ (COG4566)

Seq: AJXJ01000232.1 Pseudomonas fluorescens NZ011 contig00288_contig_1, whole genome shotgun sequence (260 bp)
Overview 1 RT 1: 2-206 bp Neighborhood of RT #1 [2, 223] RVT-UNC Feature: gene Location: 2-223 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62-206 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62 -2 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20/RVT-UG25/RVT-UG11/RVT-Retrons(RVT-UNC)

Seq: AJXJ01000272.1 Pseudomonas fluorescens NZ011 contig00349_contig_1, whole genome shotgun sequence (207 bp)
Overview 1 RT 1: 30-189 bp Neighborhood of RT #1 [30, 206] RVT-CRISPR-like Feature: gene Location: 30-206 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 78-189 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 78-189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: AJXJ01000275.1 Pseudomonas fluorescens NZ011 contig00353_contig_1, whole genome shotgun sequence (331 bp)
Overview 1 RT 1: 3-204 bp Neighborhood of RT #1 [3, 329] RVT-UNC Feature: gene Location: 3-329 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 90-204 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 90-204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG19/RVT-UG26/RVT-UG7(RVT-UNC)

Seq: AJXJ01000435.1 Pseudomonas fluorescens NZ011 contig00575_contig_1, whole genome shotgun sequence (362 bp)
Overview 1 RT 1: 1-139 bp Neighborhood of RT #1 [1, 258] RVT-CRISPR-like Feature: gene Location: 1-258 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10-139 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10-139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: AJXJ01000436.1 Pseudomonas fluorescens NZ011 contig00576_contig_1, whole genome shotgun sequence (276 bp)
Overview 1 RT 1: 1-208 bp Neighborhood of RT #1 [1, 216] RVT-UG12 Feature: gene Location: 1-216 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 91-208 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 91-208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12

Seq: AJXJ01000585.1 Pseudomonas fluorescens NZ011 contig00756_contig_1, whole genome shotgun sequence (277 bp)
Overview 1 RT 1: 2-152 bp Neighborhood of RT #1 [2, 163] RVT-UG26 Feature: gene Location: 2-163 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 17-152 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 17 -152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26

Seq: AJXJ01000630.1 Pseudomonas fluorescens NZ011 contig00804_contig_1, whole genome shotgun sequence (277 bp)
Overview 1 RT 1: 3-255 bp Neighborhood of RT #1 [3, 275] RVT-UG26 Feature: gene Location: 3-275 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 162-255 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 162-255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26

Seq: AJXJ01000704.1 Pseudomonas fluorescens NZ011 contig00905_contig_1, whole genome shotgun sequence (740 bp)
Overview 1 RT 1: 1-732 bp Neighborhood of RT #1 [1, 737] RVT-UG26 RT_RNaseH_2 RT_LTR Feature: gene Location: 1-537 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 94-214 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 9 4-214 bp Feature: domain Description: RT_RNaseH_2 Location: 436-535 bp Feature: domain Description: RT_RNaseH_2 Location: 436-535 bp Feature: gene Location: 540-737 bp Feature: domain Description: RT_LTR Location: 543-732 bp Feature: domain Description: RT_LTR Location: 543-732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RT_RNaseH_2 (pfam17919), RT_LTR (cd01647)

Seq: AJXJ01000957.1 Pseudomonas fluorescens NZ011 contig01347_contig_1, whole genome shotgun sequence (22868 bp)
Overview 1 RT 1: 17020-22733 bp Neighborhood of RT #1 [17020, 22738] RVT-UG17 KOG3844 2OG-FeII_Oxy_3 AraC_binding_2 HTH_18 Feature: gene Location: 17020-17337 bp Feature: gene Location: 17446-17790 bp Feature: gene Location: 18960-20330 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 19188-19794 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 19188-19794 bp Feature: gene Location: 20697-21500 bp Feature: domain Description: KOG3844 Location: 20751-20877 bp Feature: domain Description: KOG3844 Location: 20751-20877 bp Feature: domain Description: 2OG-FeII_Oxy_3 Location: 21087-21378 bp Feature: domain Description: 2OG-FeII_Oxy_3 Location: 210 87-21378 bp Feature: gene Location: 21641-22738 bp Feature: domain Description: AraC_binding_2 Location: 21932-22277 bp Feature: domain Description: AraC_binding_2 Location: 21932-22277 bp Feature: domain Description: HTH_18 Location: 22493-22733 bp Feature: domain Description: HTH_18 Location: 22493-22733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, KOG3844 (KOG3844, Predicted component of NuA3 histone acetyltransferase complex ), 2OG-FeII_Oxy_3 (pfam13640), AraC_binding_2 (pfam14525), HTH_18 (pfam12833)