myRT

myRT report for GCA_000278585.2_ASM27858v2

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Seq: AKYI02000079.1 Myxococcus xanthus DZ2 contig_000079, whole genome shotgun sequence (1789 bp)
Overview 1 RT 1: 14-1211 bp Neighborhood of RT #1 [14, 1324] RVT-GII GIIM Feature: gene Location: 14-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-91 7 bp Feature: domain Description: GIIM Note: maturase Location: 989-1211 bp Feature: domain Description: GIIM Note: maturase Location: 989-1 21 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AKYI02000022.1 Myxococcus xanthus DZ2 contig_000022, whole genome shotgun sequence (168046 bp)
Overview 1 RT 1: 156694-163575 bp Neighborhood of RT #1 [156694, 163754] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 156694-158559 bp Feature: gene Location: 158556-160154 bp Feature: gene Location: 160333-161616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160798-161401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160798-161401 bp Feature: gene Location: 161625-162044 bp Feature: domain Description: COG3791 Location: 161652-162006 bp Feature: domain Description: COG3791 Location: 161652 -162 006 bp Feature: gene Location: 162426-163754 bp Feature: domain Description: EpmB Location: 162489-162675 bp Feature: domain Description: EpmB Location: 162 489-162 675 bp Feature: domain Description: EpmB Location: 162819-163575 bp Feature: domain Description: EpmB Location: 162 819-163575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: AKYI02000018.1 Myxococcus xanthus DZ2 contig_000018, whole genome shotgun sequence (183133 bp)
Overview 1 RT 1: 136945-142608 bp Neighborhood of RT #1 [136945, 142608] RNase_HI_like COG4127 RVT-Retrons COG4941 Feature: gene Location: 136945-137583 bp Feature: domain Description: RNase_HI_like Location: 137194-137572 bp Feature: domain Description: RNase_HI_like Location: 13 7194-13 7572 bp Feature: gene Location: 137614-138636 bp Feature: domain Description: COG4127 Location: 137635-138622 bp Feature: domain Description: COG4127 Location: 13 763 5-13 8622 bp Feature: gene Location: 138653-139981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 139097-139751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 9097-13 9751 bp Feature: gene Location: 140350-141546 bp Feature: domain Description: COG4941 Location: 140356-141526 bp Feature: domain Description: COG4941 Location: 1403 56-141526 bp Feature: gene Location: 142180-142608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-Retrons, COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain )

Seq: AKYI02000005.1 Myxococcus xanthus DZ2 contig_000005, whole genome shotgun sequence (308597 bp)
Overview 1 RT 1: 202753-215546 bp Neighborhood of RT #1 [202753, 215566] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 202753-209289 bp Feature: domain Description: WD40 Location: 202912-203608 bp Feature: domain Description: WD4 0 Location: 202912-203608 bp Feature: domain Description: HEAT_2 Location: 203830-204013 bp Feature: domain Description: HEAT_2 Location: 203830-204 013 bp Feature: domain Description: HEAT_2 Location: 204595-204844 bp Feature: domain Description: HEAT_2 Location: 204 595-204 84 4 bp Feature: domain Description: HEAT_2 Location: 204889-205054 bp Feature: domain Description: HEAT_2 Location: 204 889-205054 bp Feature: domain Description: HEAT_2 Location: 205084-205315 bp Feature: domain Description: HEAT_2 Location: 205084 -205315 bp Feature: domain Description: HEAT_2 Location: 205753-205906 bp Feature: domain Description: HEAT_2 Location: 205753-205906 bp Feature: domain Description: HEAT_2 Location: 206017-206176 bp Feature: domain Description: HEAT_2 Location: 206017-206176 bp Feature: domain Description: HEAT_2 Location: 206536-206725 bp Feature: domain Description: HEAT_2 Location: 206536-206725 bp Feature: domain Description: HEAT_2 Location: 206770-206977 bp Feature: domain Description: HEAT_2 Location: 206770-206977 bp Feature: domain Description: HEAT_2 Location: 207142-207376 bp Feature: domain Description: HEAT_2 Location: 20714 2-207376 bp Feature: domain Description: HEAT_2 Location: 207988-208204 bp Feature: domain Description: HEAT_2 Location: 207988-208204 bp Feature: domain Description: HEAT_2 Location: 208684-208936 bp Feature: domain Description: HEAT_2 Location: 208684 -208936 bp Feature: domain Description: HEAT_2 Location: 209062-209218 bp Feature: domain Description: HEAT_2 Location: 209062-209218 bp Feature: gene Location: 209286-211139 bp Feature: gene Location: 211540-212997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 212098-212740 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 212098-21274 0 bp Feature: gene Location: 213001-213891 bp Feature: domain Description: DAP2 Location: 213127-213709 bp Feature: domain Description: DAP2 Location: 213127-213709 bp Feature: gene Location: 214043-215566 bp Feature: domain Description: BetA Location: 214058-214553 bp Feature: domain Description: BetA Location: 214 058-214 553 bp Feature: domain Description: BetA Location: 214694-214997 bp Feature: domain Description: BetA Location: 214 694 -214 997 bp Feature: domain Description: BetA Location: 215132-215546 bp Feature: domain Description: BetA Location: 215132-21554 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)