myRT

myRT report for GCA_000280885.2_ASM28088v2

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Seq: AKXW02000131.1 Vibrio breoganii 1C10 1C10_contig_5, whole genome shotgun sequence (96951 bp)
Overview 1 RT 1: 78954-86861 bp Neighborhood of RT #1 [78954, 86881] Flp LC_FACS_bac RVT-GII GIIM PRK00007 sms Feature: gene Location: 78954-79133 bp Feature: domain Description: Flp Location: 78981-79110 bp Feature: domain Description: Flp Location: 78981 -791 1 0 bp Feature: gene Location: 79268-80974 bp Feature: domain Description: LC_FACS_bac Location: 79409-80921 bp Feature: domain Description: LC_FACS_bac Location: 79409-80921 bp Feature: gene Location: 81066-82400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81279-81900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 279-81 900 bp Feature: domain Description: GIIM Note: maturase Location: 81948-82170 bp Feature: domain Description: GIIM Note: maturase Location: 81 948-821 70 bp Feature: gene Location: 83227-85311 bp Feature: domain Description: PRK00007 Location: 83233-85291 bp Feature: domain Description: PRK00007 Location: 83233-85291 bp Feature: gene Location: 85502-86881 bp Feature: domain Description: sms Location: 85505-86861 bp Feature: domain Description: sms Location: 85505-86861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flp (COG3847), LC_FACS_bac (cd05932), RVT-GII, GIIM (pfam08388), PRK00007 (elongation factor G; Reviewed), sms (TIGR00416)

Seq: AKXW02000137.1 Vibrio breoganii 1C10 1C10_contig_57, whole genome shotgun sequence (18561 bp)
Overview 1 RT 1: 7683-11477 bp Neighborhood of RT #1 [7683, 11503] DDE_Tnp_1_assoc RVT-GII GIIM atpC Feature: gene Location: 7683-7943 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 7707-7941 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 7707-7941 bp Feature: gene Location: 7981-8249 bp Feature: gene Location: 8493-9803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8709-9324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8709-932 4 bp Feature: domain Description: GIIM Note: maturase Location: 9375-9576 bp Feature: domain Description: GIIM Note: maturase Location: 9375-9576 bp Feature: gene Location: 10430-10690 bp Feature: gene Location: 11060-11503 bp Feature: domain Description: atpC Location: 11084-11477 bp Feature: domain Description: atpC Location: 11084-11477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT atpC (PRK14736), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388)

Seq: AKXW02000102.1 Vibrio breoganii 1C10 1C10_contig_295, whole genome shotgun sequence (206229 bp)
Overview 1 RT 1: 45525-50656 bp Neighborhood of RT #1 [45525, 50682] YeiH Tim44 RVT-GII GIIM YeaQ YkgJ Feature: gene Location: 45525-46448 bp Feature: domain Description: YeiH Location: 45609-46437 bp Feature: domain Description: YeiH Location: 45609-4643 7 bp Feature: gene Location: 46692-47567 bp Feature: domain Description: Tim44 Location: 46803-47565 bp Feature: domain Description: Tim44 Location: 46803 -47565 bp Feature: gene Location: 48341-49675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48554-49175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48554-49175 bp Feature: domain Description: GIIM Note: maturase Location: 49223-49445 bp Feature: domain Description: GIIM Note: maturase Location: 49223 -49445 bp Feature: gene Location: 50055-50297 bp Feature: domain Description: YeaQ Location: 50058-50289 bp Feature: domain Description: YeaQ Location: 50058-50289 bp Feature: gene Location: 50473-50682 bp Feature: domain Description: YkgJ Location: 50548-50656 bp Feature: domain Description: YkgJ Location: 50548-50656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeiH (COG2855), Tim44 (smart00978), RVT-GII, GIIM (pfam08388), YeaQ (COG2261), YkgJ (COG0727)

Seq: AKXW02000105.1 Vibrio breoganii 1C10 1C10_contig_3, whole genome shotgun sequence (86818 bp)
Overview 1 RT 1: 54467-60928 bp Neighborhood of RT #1 [54467, 60928] MFS_MefA_like Pentapeptide_4 Pentapeptide_4 RVT_N RVT-GII GIIM TIGR00367 Feature: gene Location: 54467-55663 bp Feature: domain Description: MFS_MefA_like Location: 54506-55616 bp Feature: domain Description: MFS_MefA_like Location: 54 506-55616 bp Feature: gene Location: 55691-56281 bp Feature: domain Description: Pentapeptide_4 Location: 55769-56015 bp Feature: domain Description: Pentapeptide_4 Location: 55769-56015 bp Feature: domain Description: Pentapeptide_4 Location: 56042-56237 bp Feature: domain Description: Pentapeptide_4 Location: 5604 2-56237 bp Feature: gene Location: 56928-58400 bp Feature: RT Description: RVT_N Location: 56976-57219 bp Feature: RT Description: RVT_N Location: 56976-57219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57264-57891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57264 -57891 bp Feature: domain Description: GIIM Note: maturase Location: 57951-58176 bp Feature: domain Description: GIIM Note: maturase Location: 57951-58176 bp Feature: gene Location: 58736-59845 bp Feature: domain Description: TIGR00367 Location: 58889-59816 bp Feature: domain Description: TIGR00367 Location: 58889-59816 bp Feature: gene Location: 60104-60928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), Pentapeptide_4 (pfam13599), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TIGR00367 (K+-dependent Na+/Ca+ exchanger related-protein)

Seq: AKXW02000077.1 Vibrio breoganii 1C10 1C10_contig_23, whole genome shotgun sequence (20284 bp)
Overview 1 RT 1: 6914-12480 bp Neighborhood of RT #1 [6914, 12491] TauE DUF5062 RVT_N RVT-GII GIIM DUF2971 Gph Feature: gene Location: 6914-7633 bp Feature: domain Description: TauE Location: 6941-7598 bp Feature: domain Description: TauE Location: 6941-75 98 bp Feature: gene Location: 7755-8015 bp Feature: domain Description: DUF5062 Location: 7773-8013 bp Feature: domain Description: DUF5 062 Location: 7773-8013 bp Feature: gene Location: 8203-9834 bp Feature: RT Description: RVT_N Location: 8410-8653 bp Feature: RT Description: RVT_N Location: 8410-865 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8698-9325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8698-9325 bp Feature: domain Description: GIIM Note: maturase Location: 9385-9610 bp Feature: domain Description: GIIM Note: maturase Location: 9385 -9610 bp Feature: gene Location: 10481-11299 bp Feature: domain Description: DUF2971 Location: 10805-11093 bp Feature: domain Description: DUF2971 Location: 10805 -11093 bp Feature: gene Location: 11781-12491 bp Feature: domain Description: Gph Location: 11784-12480 bp Feature: domain Description: Gph Location: 11784-12480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), Gph (COG0546), TauE (pfam01925), DUF5062 (pfam16691), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: AKXW02000126.1 Vibrio breoganii 1C10 1C10_contig_43, whole genome shotgun sequence (58002 bp)
Overview 1 RT 1: 39382-44877 bp Neighborhood of RT #1 [39382, 44900] PRK13960 YjiH RVT-GII GIIM DUF1059 KOG0805 Feature: gene Location: 39382-40485 bp Feature: domain Description: PRK13960 Location: 39385-40483 bp Feature: domain Description: PRK1396 0 Location: 39385-40483 bp Feature: gene Location: 40793-42166 bp Feature: domain Description: YjiH Location: 40832-42143 bp Feature: domain Description: YjiH Location: 40832-42143 bp Feature: gene Location: 42293-43627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42506-43127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42506 -43127 bp Feature: domain Description: GIIM Note: maturase Location: 43175-43397 bp Feature: domain Description: GIIM Note: maturase Location: 43175-43397 bp Feature: gene Location: 44414-44650 bp Feature: domain Description: DUF1059 Location: 44468-44621 bp Feature: domain Description: DUF1059 Location: 4446 8-446 21 bp Feature: gene Location: 44670-44900 bp Feature: domain Description: KOG0805 Location: 44685-44877 bp Feature: domain Description: KOG0805 Location: 446 85-44877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13960 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional), YjiH (COG3314), RVT-GII, GIIM (pfam08388), DUF1059 (pfam06348), KOG0805 (KOG0805, Carbon-nitrogen hydrolase )

Seq: AKXW02000128.1 Vibrio breoganii 1C10 1C10_contig_45, whole genome shotgun sequence (1177 bp)
Overview 1 RT 1: 218-1052 bp Neighborhood of RT #1 [218, 1177] RVT-GII Feature: gene Location: 218-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII