myRT

myRT report for GCA_000281815.1_ASM28181v1

Download annotations/find similar RTs

Seq: AGRD01000034.1 Shigella sonnei str. Moseley gssMOS.contig.33, whole genome shotgun sequence (14417 bp)
Overview 1 RT 1: 11773-14400 bp Neighborhood of RT #1 [11773, 14417] RVT-GII Tra5 Feature: gene Location: 11773-11904 bp Feature: gene Location: 12076-12231 bp Feature: gene Location: 13083-13958 bp Ori: EJL18286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13131-13788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 31 -1 3788 bp Feature: gene Location: 14223-14417 bp Ori: EJL18287.1 Feature: domain Description: Tra5 Location: 14235-14400 bp Feature: domain Description: Tra5 Location: 1 4235-1 4400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801)

Seq: AGRD01000058.1 Shigella sonnei str. Moseley gssMOS.contig.57, whole genome shotgun sequence (25777 bp)
Overview 1 RT 1: 11960-15135 bp Neighborhood of RT #1 [11960, 15135] Antirestrict DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 11960-12307 bp Ori: EJL15156.1 Feature: domain Description: Antirestrict Location: 12095-12281 bp Feature: domain Description: Antirestrict Location: 12 095-12 2 81 bp Feature: gene Location: 12885-13601 bp Ori: EJL15157.1 Feature: domain Description: DDE_Tnp_1 Location: 12891-13533 bp Feature: domain Description: DDE_Tnp_1 Location: 12 891-13533 bp Feature: gene Location: 13693-13896 bp Ori: EJL15158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13801-13891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13801-13891 bp Feature: gene Location: 13999-14313 bp Ori: EJL15159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14002-14287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14002 -142 87 bp Feature: gene Location: 14407-14679 bp Ori: EJL15160.1 Feature: domain Description: InsE Location: 14410-14536 bp Feature: domain Description: InsE Location: 14410-14536 bp Feature: gene Location: 14995-15135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)