myRT

myRT report for GCA_000281975.1_Novosphingobium.strAP12_v1.0

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Seq: AKKE01000157.1 Novosphingobium sp. AP12 PMI02_contig_441.441, whole genome shotgun sequence (70040 bp)
Overview 1 RT 1: 51193-57806 bp Neighborhood of RT #1 [51193, 57820] RlmJ COG3177 RVT-GII GIIM MFS_YcxA_like HTH_CadR-PbrR-like Feature: gene Location: 51193-51456 bp Ori: EJL22051.1 Feature: domain Description: RlmJ Location: 51196-51451 bp Feature: domain Description: RlmJ Location: 51 1 96-51 451 bp Feature: gene Location: 52673-53776 bp Ori: EJL22052.1 Feature: domain Description: COG3177 Location: 52679-53762 bp Feature: domain Description: COG31 77 Location: 52679-53762 bp Feature: gene Location: 53922-55241 bp Ori: EJL22053.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54213-54873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5421 3-54873 bp Feature: domain Description: GIIM Note: maturase Location: 54945-55158 bp Feature: domain Description: GIIM Note: maturase Location: 54945-551 58 bp Feature: gene Location: 56007-57206 bp Ori: EJL22054.1 Feature: domain Description: MFS_YcxA_like Location: 56070-57177 bp Feature: domain Description: MFS_YcxA_like Location: 56070-571 77 bp Feature: gene Location: 57500-57820 bp Ori: EJL22055.1 Feature: domain Description: HTH_CadR-PbrR-like Location: 57503-57806 bp Feature: domain Description: HTH_CadR-PbrR-like Location: 57503-57806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RlmJ (COG2961), COG3177 (Fic family protein ), RVT-GII, GIIM (pfam08388), MFS_YcxA_like (cd17355), HTH_CadR-PbrR-like (cd04785)

Seq: AKKE01000163.1 Novosphingobium sp. AP12 PMI02_contig_447.447, whole genome shotgun sequence (1745 bp)
Overview 1 RT 1: 1-1234 bp Neighborhood of RT #1 [1, 1329] RVT-GII GIIM Feature: gene Location: 1-1329 bp Ori: EJL21445.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-985 bp Feature: domain Description: GIIM Note: maturase Location: 1033-1234 bp Feature: domain Description: GIIM Note: maturase Location: 1033-12 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AKKE01000155.1 Novosphingobium sp. AP12 PMI02_contig_439.439, whole genome shotgun sequence (57830 bp)
Overview 1 RT 1: 22553-28132 bp Neighborhood of RT #1 [22553, 28132] DUF262 DUF1524 PinE RVT-CRISPR-like HTH_XRE Feature: gene Location: 22553-24454 bp Ori: EJL22434.1 Feature: domain Description: DUF262 Location: 22586-23294 bp Feature: domain Description: DUF262 Location: 22586-23 294 bp Feature: domain Description: DUF1524 Location: 23912-24368 bp Feature: domain Description: DUF1524 Location: 23 912-243 68 bp Feature: gene Location: 24626-25201 bp Ori: EJL22435.1 Feature: domain Description: PinE Location: 24629-25172 bp Feature: domain Description: PinE Location: 24629-25172 bp Feature: gene Location: 25747-27192 bp Ori: EJL22436.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26227-26641 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26227-26641 bp Feature: gene Location: 27272-27541 bp Ori: EJL22437.1 Feature: domain Description: HTH_XRE Location: 27362-27527 bp Feature: domain Description: HTH_XRE Location: 273 62-27527 bp Feature: gene Location: 27629-28132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), DUF1524 (pfam07510), PinE (COG1961), RVT-CRISPR, HTH_XRE (smart00530)