myRT

myRT report for GCA_000281995.2_Burkholderia.strBT03_v2.0

Download annotations/find similar RTs

Seq: AKKD02000054.1 Burkholderia sp. BT03 ctg26, whole genome shotgun sequence (160940 bp)
Overview 1 RT 1: 154052-160806 bp Neighborhood of RT #1 [154052, 160940] ABC_ATPase AAA_21 TIGR02646 RVT-UG7 DDE_Tnp_IS1595 Feature: gene Location: 154052-156472 bp Ori: EUC18845.1 Feature: domain Description: ABC_ATPase Location: 155417-155501 bp Feature: domain Description: ABC_ATPase Location: 1 5541 7-1 55501 bp Feature: domain Description: AAA_21 Location: 155837-156134 bp Feature: domain Description: AAA_21 Location: 1 55837-1 561 34 bp Feature: gene Location: 156469-157236 bp Ori: EUC18846.1 Feature: domain Description: TIGR02646 Location: 156685-156865 bp Feature: domain Description: TIGR02646 Location: 1 56685-1 56865 bp Feature: gene Location: 157477-159048 bp Ori: EUC18847.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 157846-158263 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 57846-1 58263 bp Feature: gene Location: 159549-159854 bp Feature: gene Location: 160227-160940 bp Ori: EUC18849.1 Feature: domain Description: DDE_Tnp_IS1595 Location: 160347-160806 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 1 60347-1 60806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_ATPase (pfam09818), AAA_21 (pfam13304), TIGR02646 (TIGR02646 family protein), RVT-UG7, DDE_Tnp_IS1595 (pfam12762)

Seq: AKKD02000070.1 Burkholderia sp. BT03 ctg40, whole genome shotgun sequence (155283 bp)
Overview 1 RT 1: 95041-103048 bp Neighborhood of RT #1 [95041, 103050] PRK10832 uvrC RVT_N RVT-GII GIIM HNHc EarP PRK00529 Feature: gene Location: 95041-95631 bp Ori: EUC17547.1 Feature: domain Description: PRK10832 Location: 95044-95614 bp Feature: domain Description: PRK10832 Location: 95044-95614 bp Feature: gene Location: 95742-97934 bp Ori: EUC17548.1 Feature: domain Description: uvrC Location: 95832-97932 bp Feature: domain Description: uvrC Location: 95832 -97932 bp Feature: gene Location: 98087-99787 bp Ori: EUC17549.1 Feature: domain Description: RVT_N Location: 98144-98387 bp Feature: domain Description: RVT_N Location: 98144-98387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98432-99080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98432 -99080 bp Feature: domain Description: GIIM Note: maturase Location: 99134-99365 bp Feature: domain Description: GIIM Note: maturase Location: 99134-99365 bp Feature: domain Description: HNHc Note: nucleases Location: 99596-99749 bp Feature: domain Description: HNHc Note: nucleases Location: 99596-99749 bp Feature: gene Location: 100982-102163 bp Ori: EUC17550.1 Feature: domain Description: EarP Location: 101030-102146 bp Feature: domain Description: EarP Location: 101030-102 146 bp Feature: gene Location: 102493-103050 bp Ori: EUC17551.1 Feature: domain Description: PRK00529 Location: 102496-103048 bp Feature: domain Description: PRK0052 9 Location: 102 496-103048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10832 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase), uvrC (TIGR00194), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), EarP (TIGR03837), PRK00529 (elongation factor P; Validated)

Seq: AKKD02000003.1 Burkholderia sp. BT03 ctg102, whole genome shotgun sequence (262611 bp)
Overview 1 RT 1: 182096-189850 bp Neighborhood of RT #1 [182096, 189894] PRK11579 rep RVT-GII GIIM CytC5 CytC5 LbH_AT_putative Feature: gene Location: 182096-183145 bp Ori: EUC21273.1 Feature: domain Description: PRK11579 Location: 182099-183116 bp Feature: domain Description: PRK11579 Location: 182099-183 116 bp Feature: gene Location: 183495-185582 bp Ori: EUC21274.1 Feature: domain Description: rep Location: 183510-185499 bp Feature: domain Description: rep Location: 183 510-185499 bp Feature: gene Location: 185707-187074 bp Ori: EUC21275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186034-186655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18603 4-186655 bp Feature: domain Description: GIIM Note: maturase Location: 186706-186910 bp Feature: domain Description: GIIM Note: maturase Location: 186706-186910 bp Feature: gene Location: 187600-188532 bp Ori: EUC21276.1 Feature: domain Description: CytC5 Location: 187759-188068 bp Feature: domain Description: CytC5 Location: 187759-188068 bp Feature: domain Description: CytC5 Location: 188179-188527 bp Feature: domain Description: CytC5 Location: 188179-188527 bp Feature: gene Location: 189220-189894 bp Ori: EUC21277.1 Feature: domain Description: LbH_AT_putative Location: 189253-189850 bp Feature: domain Description: LbH_AT_putative Location: 189253 -189850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11579 (putative oxidoreductase; Provisional), rep (TIGR01074), RVT-GII, GIIM (pfam08388), CytC5 (COG3245), LbH_AT_putative (cd03360)

Seq: AKKD02000079.1 Burkholderia sp. BT03 ctg49, whole genome shotgun sequence (79657 bp)
Overview 1 RT 1: 43051-49843 bp Neighborhood of RT #1 [43051, 49995] moaC PglL_A Wzy_C Wzy_C_2 RVT_N RVT-GII GIIM HNHc PilA R_switched_YjbE Feature: gene Location: 43051-43527 bp Ori: EUC17072.1 Feature: domain Description: moaC Location: 43057-43522 bp Feature: domain Description: moaC Location: 4 3057-4 3522 bp Feature: gene Location: 43631-45421 bp Ori: EUC17073.1 Feature: domain Description: PglL_A Location: 44138-44210 bp Feature: domain Description: PglL_A Location: 4 4 138-4 4 210 bp Feature: domain Description: Wzy_C Location: 44252-44720 bp Feature: domain Description: Wzy_C Location: 4 4 252-4 4 720 bp Feature: domain Description: Wzy_C_2 Location: 44786-45290 bp Feature: domain Description: Wzy_C_2 Location: 4 4 786-4 5290 bp Feature: gene Location: 45546-47252 bp Ori: EUC17074.1 Feature: domain Description: RVT_N Location: 45603-45846 bp Feature: domain Description: RVT_N Location: 4 5603-4 584 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45891-46539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5891-4 6539 bp Feature: domain Description: GIIM Note: maturase Location: 46590-46824 bp Feature: domain Description: GIIM Note: maturase Location: 4 6590-4 6824 bp Feature: domain Description: HNHc Note: nucleases Location: 47067-47208 bp Feature: domain Description: HNHc Note: nucleases Location: 4 7067-4 7208 bp Feature: gene Location: 48514-49131 bp Ori: EUC17075.1 Feature: domain Description: PilA Location: 48628-48859 bp Feature: domain Description: PilA Location: 4 8628-4 8859 bp Feature: gene Location: 49270-49995 bp Ori: EUC17076.1 Feature: domain Description: R_switched_YjbE Location: 49306-49843 bp Feature: domain Description: R_switched_YjbE Location: 4 9306-4 984 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT moaC (TIGR00581), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PilA (COG4969), R_switched_YjbE (TIGR03717)

Seq: AKKD02000106.1 Burkholderia sp. BT03 ctg73, whole genome shotgun sequence (401105 bp)
Overview 1 RT 1: 212231-217515 bp Neighborhood of RT #1 [212231, 217526] RVT-GII groES groEL Feature: gene Location: 212231-212440 bp Feature: gene Location: 213516-214004 bp Feature: gene Location: 214468-215073 bp Ori: EUC14678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214894-215029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214894-215 029 bp Feature: gene Location: 215552-215842 bp Ori: EUC14679.1 Feature: domain Description: groES Location: 215555-215837 bp Feature: domain Description: groES Location: 215 5 5 5 -215 837 bp Feature: gene Location: 215886-217526 bp Ori: EUC14680.1 Feature: domain Description: groEL Location: 215889-217515 bp Feature: domain Description: groEL Location: 215 889-2175 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, groES (PRK14533), groEL (PRK12852)

Seq: AKKD02000083.1 Burkholderia sp. BT03 ctg52, whole genome shotgun sequence (155934 bp)
Overview 1 RT 1: 11482-17884 bp Neighborhood of RT #1 [11482, 17904] COG2928 COG2331 RVT_N RVT-GII GIIM HNHc TPMT ubiB Feature: gene Location: 11482-12138 bp Ori: EUC16633.1 Feature: domain Description: COG2928 Location: 11497-12103 bp Feature: domain Description: COG2928 Location: 11497-12103 bp Feature: gene Location: 12206-12565 bp Ori: EUC16634.1 Feature: domain Description: COG2331 Location: 12209-12428 bp Feature: domain Description: COG2331 Location: 12209-12428 bp Feature: gene Location: 12699-14399 bp Ori: EUC16635.1 Feature: domain Description: RVT_N Location: 12756-12999 bp Feature: domain Description: RVT_N Location: 12756 -12999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13044-13692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13044-136 92 bp Feature: domain Description: GIIM Note: maturase Location: 13749-13977 bp Feature: domain Description: GIIM Note: maturase Location: 13749-13977 bp Feature: domain Description: HNHc Note: nucleases Location: 14202-14361 bp Feature: domain Description: HNHc Note: nucleases Location: 14202-1436 1 bp Feature: gene Location: 15651-16298 bp Ori: EUC16636.1 Feature: domain Description: TPMT Location: 15720-16266 bp Feature: domain Description: TPMT Location: 15720-16 26 6 bp Feature: gene Location: 16321-17904 bp Ori: EUC16637.1 Feature: domain Description: ubiB Location: 16324-17884 bp Feature: domain Description: ubiB Location: 16 324-17884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2928 (Uncharacterized membrane protein ), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TPMT (pfam05724), ubiB (PRK04750)