myRT

myRT report for GCA_000282155.1_Pseudomonas.strGM16_v1.0

Download annotations/find similar RTs

Seq: AKJV01000102.1 Pseudomonas sp. GM16 PMI19_contig_124, whole genome shotgun sequence (14593 bp)
Overview 1 RT 1: 9352-13202 bp Neighborhood of RT #1 [9352, 14182] RVT-UG3 RVT-UG8 Feature: gene Location: 9352-9741 bp Feature: gene Location: 9899-10258 bp Feature: gene Location: 10795-12141 bp Ori: EJL96078.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 11248-11722 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 1 248-1 1 722 bp Feature: gene Location: 12134-14182 bp Ori: EJL96079.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 12752-13202 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 2752-1 3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8

Seq: AKJV01000120.1 Pseudomonas sp. GM16 PMI19_contig_202, whole genome shotgun sequence (147517 bp)
Overview 1 RT 1: 90483-96191 bp Neighborhood of RT #1 [90483, 96199] PRK06133 ABC_ATPase RVT-Retrons PrpB Feature: gene Location: 90483-91721 bp Ori: EJL95349.1 Feature: domain Description: PRK06133 Location: 90531-91716 bp Feature: domain Description: PRK06133 Location: 90531-91716 bp Feature: gene Location: 91802-93142 bp Ori: EJL95350.1 Feature: domain Description: ABC_ATPase Location: 91859-92567 bp Feature: domain Description: ABC_ATPase Location: 91859-92 567 bp Feature: gene Location: 93142-94095 bp Ori: EJL95351.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93256-93814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 932 56-93814 bp Feature: gene Location: 94895-95197 bp Feature: gene Location: 95330-96199 bp Ori: EJL95353.1 Feature: domain Description: PrpB Location: 95351-96191 bp Feature: domain Description: PrpB Location: 95351-96191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06133 (glutamate carboxypeptidase; Reviewed), ABC_ATPase (pfam09818), RVT-Retrons, PrpB (COG2513)

Seq: AKJV01000002.1 Pseudomonas sp. GM16 PMI19_contig_2, whole genome shotgun sequence (53380 bp)
Overview 1 RT 1: 37915-44415 bp Neighborhood of RT #1 [37915, 44441] F420_MSMEG_4141 F420_MSMEG_4141 F420_MSMEG_4141 PRK09269 RVT-UG5 nitrilase MATE_yoeA_like Feature: gene Location: 37915-38238 bp Ori: EJM08496.1 Feature: domain Description: F420_MSMEG_4141 Location: 37993-38071 bp Feature: domain Description: F420_MSMEG_4141 Location: 3 7993 -3 8071 bp Feature: domain Description: F420_MSMEG_4141 Location: 38071-38149 bp Feature: domain Description: F420_MSMEG_4141 Location: 3 8071-3 8149 bp Feature: domain Description: F420_MSMEG_4141 Location: 38149-38227 bp Feature: domain Description: F420_MSMEG_4141 Location: 3 8149-3 8227 bp Feature: gene Location: 38362-38928 bp Ori: EJM08497.1 Feature: domain Description: PRK09269 Location: 38395-38914 bp Feature: domain Description: PRK09269 Location: 3 83 95-3 8914 bp Feature: gene Location: 39348-42566 bp Ori: EJM08498.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39879-40374 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 9879-403 74 bp Feature: domain Description: nitrilase Location: 41874-42477 bp Feature: domain Description: nitrilase Location: 41874-42477 bp Feature: gene Location: 42722-42871 bp Feature: gene Location: 43086-44441 bp Ori: EJM08500.1 Feature: domain Description: MATE_yoeA_like Location: 43116-44415 bp Feature: domain Description: MATE_yoeA_like Location: 43 116-44415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F420_MSMEG_4141 (TIGR03620), PRK09269 (chorismate mutase; Provisional), RVT-UG5, nitrilase (cl11424), MATE_yoeA_like (cd13138)