myRT

myRT report for GCA_000282215.1_Pseudomonas.strGM21_v1.0

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Seq: AKJS01000163.1 Pseudomonas sp. GM21 PMI22_contig_190.190, whole genome shotgun sequence (23262 bp)
Overview 1 RT 1: 13159-18845 bp Neighborhood of RT #1 [13159, 18895] PrpB RVT-Retrons ABC_ATPase adrA Feature: gene Location: 13159-14028 bp Feature: domain Description: PrpB Location: 13180-14017 bp Feature: domain Description: PrpB Location: 1 31 80-1 401 7 bp Feature: gene Location: 14160-14462 bp Feature: gene Location: 15380-16333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15485-16055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5485-1 6055 bp Feature: gene Location: 16333-17673 bp Feature: domain Description: ABC_ATPase Location: 16372-17086 bp Feature: domain Description: ABC_ATPase Location: 1 6372-1 7086 bp Feature: gene Location: 17822-18895 bp Feature: domain Description: adrA Location: 17843-18845 bp Feature: domain Description: adrA Location: 1 7843-1 8845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrpB (COG2513), RVT-Retrons, ABC_ATPase (pfam09818), adrA (PRK10245)

Seq: AKJS01000060.1 Pseudomonas sp. GM21 PMI22_contig_63.63, whole genome shotgun sequence (1106 bp)
Overview 1 RT 1: 1-1101 bp Neighborhood of RT #1 [1, 1106] RVT-GII DltE Feature: gene Location: 1-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 -382 bp Feature: gene Location: 723-1106 bp Feature: domain Description: DltE Location: 738-1101 bp Feature: domain Description: DltE Location: 738-1101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DltE (COG3967)

Seq: AKJS01000053.1 Pseudomonas sp. GM21 PMI22_contig_56.56, whole genome shotgun sequence (983 bp)
Overview 1 RT 1: 1-976 bp Neighborhood of RT #1 [1, 981] RVT-GII GIIM Feature: gene Location: 1-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 -808 bp Feature: domain Description: GIIM Note: maturase Location: 862-976 bp Feature: domain Description: GIIM Note: maturase Location: 862-976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AKJS01000123.1 Pseudomonas sp. GM21 PMI22_contig_136.136, whole genome shotgun sequence (1660 bp)
Overview 1 RT 1: 383-1613 bp Neighborhood of RT #1 [383, 1660] RVT-GII GIIM Feature: gene Location: 383-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 716-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 716-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1388-1613 bp Feature: domain Description: GIIM Note: maturase Location: 1388-1613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AKJS01000085.1 Pseudomonas sp. GM21 PMI22_contig_98.98, whole genome shotgun sequence (62659 bp)
Overview 1 RT 1: 47729-52975 bp Neighborhood of RT #1 [47729, 52989] cmk rpsA RVT-GII hip Feature: gene Location: 47729-48418 bp Feature: domain Description: cmk Location: 47741-48395 bp Feature: domain Description: cmk Location: 47741-48395 bp Feature: gene Location: 48539-50224 bp Feature: domain Description: rpsA Location: 48542-50213 bp Feature: domain Description: rpsA Location: 485 42-5 0213 bp Feature: gene Location: 50698-51720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50983-51598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0983-5 15 98 bp Feature: gene Location: 52272-52550 bp Feature: gene Location: 52693-52989 bp Feature: domain Description: hip Location: 52696-52975 bp Feature: domain Description: hip Location: 5 2696-5 2975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cmk (TIGR00017), rpsA (TIGR00717), RVT-GII, hip (TIGR00988)

Seq: AKJS01000112.1 Pseudomonas sp. GM21 PMI22_contig_125.125, whole genome shotgun sequence (96075 bp)
Overview 1 RT 1: 86411-91515 bp Neighborhood of RT #1 [86411, 91515] DUF2160 UgpB RVT-GII GIIM Feature: gene Location: 86411-86689 bp Feature: domain Description: DUF2160 Location: 86426-86687 bp Feature: domain Description: DUF216 0 Location: 86 426 -86 6 87 bp Feature: gene Location: 86738-88480 bp Feature: domain Description: UgpB Location: 86777-88304 bp Feature: domain Description: UgpB Location: 86 777-88304 bp Feature: gene Location: 88955-90382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89240-89852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89240-89852 bp Feature: domain Description: GIIM Note: maturase Location: 89909-90113 bp Feature: domain Description: GIIM Note: maturase Location: 89909-90113 bp Feature: gene Location: 90669-91166 bp Feature: gene Location: 91306-91515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2160 (pfam09928), UgpB (COG1653), RVT-GII, GIIM (pfam08388)