myRT

myRT report for GCA_000282235.1_Pseudomonas.strGM24_v1.0

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Seq: AKJR01000146.1 Pseudomonas sp. GM24 PMI23_contig_152.152, whole genome shotgun sequence (4789 bp)
Overview 1 RT 1: 1-4789 bp Neighborhood of RT #1 [1, 4789] RVT-UG8 RVT-UG3 Feature: gene Location: 1-427 bp Feature: gene Location: 790-2838 bp Ori: EJM35184.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1408-1858 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 408-1 858 bp Feature: gene Location: 2831-4177 bp Ori: EJM35185.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3284-3758 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3284-3758 bp Feature: gene Location: 4714-4789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3

Seq: AKJR01000177.1 Pseudomonas sp. GM24 PMI23_contig_234.234, whole genome shotgun sequence (32603 bp)
Overview 1 RT 1: 14734-21234 bp Neighborhood of RT #1 [14734, 21260] F420_MSMEG_4141 F420_MSMEG_4141 F420_MSMEG_4141 PRK09269 RVT-UG5 nitrilase MATE_yoeA_like Feature: gene Location: 14734-15057 bp Ori: EJM33359.1 Feature: domain Description: F420_MSMEG_4141 Location: 14812-14890 bp Feature: domain Description: F42 0_MSMEG_4141 Location: 14812 -14890 bp Feature: domain Description: F420_MSMEG_4141 Location: 14890-14968 bp Feature: domain Description: F42 0_MSMEG_4141 Location: 14890-14968 bp Feature: domain Description: F420_MSMEG_4141 Location: 14968-15046 bp Feature: domain Description: F42 0_MSMEG_4141 Location: 14968-15046 bp Feature: gene Location: 15181-15747 bp Ori: EJM33360.1 Feature: domain Description: PRK09269 Location: 15214-15733 bp Feature: domain Description: PRK092 69 Location: 152 14-15733 bp Feature: gene Location: 16167-19385 bp Ori: EJM33361.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16698-17193 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16698-17193 bp Feature: domain Description: nitrilase Location: 18693-19296 bp Feature: domain Description: nitrilase Location: 18693-192 96 bp Feature: gene Location: 19541-19690 bp Feature: gene Location: 19905-21260 bp Ori: EJM33363.1 Feature: domain Description: MATE_yoeA_like Location: 19935-21234 bp Feature: domain Description: MATE_yoeA_like Location: 19935-2 12 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F420_MSMEG_4141 (TIGR03620), PRK09269 (chorismate mutase; Provisional), RVT-UG5, nitrilase (cl11424), MATE_yoeA_like (cd13138)

Seq: AKJR01000215.1 Pseudomonas sp. GM24 PMI23_contig_272.272, whole genome shotgun sequence (34434 bp)
Overview 1 RT 1: 171-5879 bp Neighborhood of RT #1 [171, 5887] PRK06133 ABC_ATPase RVT-Retrons PrpB Feature: gene Location: 171-1409 bp Ori: EJM30173.1 Feature: domain Description: PRK06133 Location: 219-1404 bp Feature: domain Description: PRK0613 3 Location: 219-1404 bp Feature: gene Location: 1490-2830 bp Ori: EJM30174.1 Feature: domain Description: ABC_ATPase Location: 1547-2255 bp Feature: domain Description: ABC_ATPase Location: 1547-2255 bp Feature: gene Location: 2830-3783 bp Ori: EJM30175.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944-3502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2944-3 502 bp Feature: gene Location: 4583-4885 bp Feature: gene Location: 5018-5887 bp Ori: EJM30177.1 Feature: domain Description: PrpB Location: 5039-5879 bp Feature: domain Description: PrpB Location: 503 9-5879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06133 (glutamate carboxypeptidase; Reviewed), ABC_ATPase (pfam09818), RVT-Retrons, PrpB (COG2513)