myRT

myRT report for GCA_000282335.1_Pseudomonas.strGM48_v1.0

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Seq: AKJM01000112.1 Pseudomonas sp. GM48 PMI28_contig_160.160, whole genome shotgun sequence (142803 bp)
Overview 1 RT 1: 799-3917 bp Neighborhood of RT #1 [799, 3917] RVT-Retrons Feature: gene Location: 799-1968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1063-1693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 063-1 693 bp Feature: gene Location: 2153-3472 bp Feature: gene Location: 3702-3917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: AKJM01000154.1 Pseudomonas sp. GM48 PMI28_contig_202.202, whole genome shotgun sequence (14627 bp)
Overview 1 RT 1: 3489-8352 bp Neighborhood of RT #1 [3489, 8597] DDE_Tnp_1_2 OafA RVT_N RVT-GII GIIM TPR Feature: gene Location: 3489-3926 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3636-3900 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3636-3900 bp Feature: gene Location: 4174-4398 bp Feature: domain Description: OafA Location: 4219-4333 bp Feature: domain Description: OafA Location: 42 19-4333 bp Feature: gene Location: 5323-6984 bp Feature: RT Description: RVT_N Location: 5368-5611 bp Feature: RT Description: RVT_N Location: 5368-5611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5656-6292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5656-62 92 bp Feature: domain Description: GIIM Note: maturase Location: 6349-6577 bp Feature: domain Description: GIIM Note: maturase Location: 6349-6577 bp Feature: gene Location: 7681-8055 bp Feature: gene Location: 8055-8597 bp Feature: domain Description: TPR Location: 8073-8352 bp Feature: domain Description: TPR Location: 8073-8352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), OafA (COG1835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TPR (smart00028)