myRT

myRT report for GCA_000282375.1_Pseudomonas.strGM50_v1.0

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Seq: AKJK01000108.1 Pseudomonas sp. GM50 PMI30_contig_141.141, whole genome shotgun sequence (68798 bp)
Overview 1 RT 1: 12092-18743 bp Neighborhood of RT #1 [12092, 18743] Acetyltransf_7 PRK05257 RVT-Retrons ABC_ATPase Feature: gene Location: 12092-12802 bp Feature: domain Description: Acetyltransf_7 Location: 12302-12533 bp Feature: domain Description: Acetyltransf_7 Location: 1 2302-1 2533 bp Feature: gene Location: 13120-14766 bp Feature: domain Description: PRK05257 Location: 13195-14668 bp Feature: domain Description: PRK05257 Location: 1 31 95-1 4668 bp Feature: gene Location: 15556-16509 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15670-16228 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5670-1 6228 bp Feature: gene Location: 16506-17849 bp Feature: domain Description: ABC_ATPase Location: 16536-17268 bp Feature: domain Description: ABC_ATPase Location: 1 6536-1 7268 bp Feature: gene Location: 18216-18743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_7 (pfam13508), PRK05257 (malate:quinone oxidoreductase; Validated), RVT-Retrons, ABC_ATPase (pfam09818)

Seq: AKJK01000128.1 Pseudomonas sp. GM50 PMI30_contig_161.161, whole genome shotgun sequence (1826 bp)
Overview 1 RT 1: 1-1211 bp Neighborhood of RT #1 [1, 1369] RVT-GII GIIM Feature: gene Location: 1-120 bp Feature: gene Location: 77-1369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-950 bp Feature: domain Description: GIIM Note: maturase Location: 1007-1211 bp Feature: domain Description: GIIM Note: maturase Location: 1007-12 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AKJK01000100.1 Pseudomonas sp. GM50 PMI30_contig_133.133, whole genome shotgun sequence (155195 bp)
Overview 1 RT 1: 3610-8337 bp Neighborhood of RT #1 [3610, 8351] YdeN MhpC RVT-GII GIIM DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 3610-4233 bp Feature: domain Description: YdeN Location: 3616-4135 bp Feature: domain Description: YdeN Location: 3 616-413 5 bp Feature: gene Location: 4226-4975 bp Feature: domain Description: MhpC Location: 4250-4970 bp Feature: domain Description: MhpC Location: 4250-4970 bp Feature: gene Location: 5281-6510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5482-6133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5482-613 3 bp Feature: domain Description: GIIM Note: maturase Location: 6211-6415 bp Feature: domain Description: GIIM Note: maturase Location: 6211-6415 bp Feature: gene Location: 6973-7608 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6979-7567 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6979-7567 bp Feature: gene Location: 7998-8351 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8127-8337 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8127-83 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeN (COG3545), MhpC (COG0596), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007)