myRT

myRT report for GCA_000285395.1_ASM28539v1

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Seq: CAED01000111.1 Pseudomonas putida B001 WGS project CAED00000000 data, contig00121, whole genome shotgun sequence (57257 bp)
Overview 1 RT 1: 14665-19026 bp 2 RT 2: 45227-48160 bp Neighborhood of RT #1 [14665, 19034] Arm-DNA-bind_3 INT_P4_C RVT-GII SphA Neighborhood of RT #2 [45227, 48201] RraA RVT-Retrons OprD MFS_ShiA_like Feature: gene Location: 14665-14985 bp Feature: gene Location: 15410-16804 bp Feature: domain Description: Arm-DNA-bind_3 Location: 15422-15683 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 5422-1 5683 bp Feature: domain Description: INT_P4_C Location: 16184-16763 bp Feature: domain Description: INT_P4_C Location: 1 61 84-1 6763 bp Feature: gene Location: 16905-17219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16965-17178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6965-1 71 78 bp Feature: gene Location: 17288-17470 bp Feature: gene Location: 18069-19034 bp Feature: domain Description: SphA Location: 18159-19026 bp Feature: domain Description: SphA Location: 1 81 59-1 9026 bp Feature: gene Location: 45227-45853 bp Feature: domain Description: RraA Location: 45248-45833 bp Feature: domain Description: RraA Location: 45248-45833 bp Feature: gene Location: 45902-46102 bp Feature: gene Location: 46148-46357 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46154-46325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 461 54-46325 bp Feature: gene Location: 46426-46695 bp Feature: domain Description: OprD Location: 46540-46684 bp Feature: domain Description: OprD Location: 46540-46684 bp Feature: gene Location: 46849-48201 bp Feature: domain Description: MFS_ShiA_like Location: 46948-48160 bp Feature: domain Description: MFS_ShiA_like Location: 46948-481 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-GII, SphA (COG4313), RraA (COG0684), RVT-Retrons, OprD (pfam03573), MFS_ShiA_like (cd17369)