myRT

myRT report for GCA_000285615.1_ASM28561v1

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Seq: CAFF01000939.1 Pseudomonas fluorescens Wood1R, WGS project CAFF00000000 data, contig NODE_3234_length_7016_cov_13.636972, whole genome shotgun sequence (7046 bp)
Overview 1 RT 1: 599-6932 bp Neighborhood of RT #1 [599, 6940] GATase_4 RVT_N RVT-GII GIIM HNHc PtrB Feature: gene Location: 599-1375 bp Feature: domain Description: GATase_4 Location: 602-1364 bp Feature: domain Description: GATase_4 Location: 602-1 364 bp Feature: gene Location: 1408-1905 bp Feature: gene Location: 2001-3698 bp Feature: domain Description: RVT_N Location: 2058-2301 bp Feature: domain Description: RVT_N Location: 2058-2301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2346-2982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2346-2982 bp Feature: domain Description: GIIM Note: maturase Location: 3033-3267 bp Feature: domain Description: GIIM Note: maturase Location: 3033-3267 bp Feature: domain Description: HNHc Note: nucleases Location: 3486-3651 bp Feature: domain Description: HNHc Note: nucleases Location: 3486-3651 bp Feature: gene Location: 3837-4148 bp Feature: gene Location: 4718-6940 bp Feature: domain Description: PtrB Location: 4940-6932 bp Feature: domain Description: PtrB Location: 4940-6932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase_4 (pfam13230), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PtrB (COG1770)

Seq: CAFF01000738.1 Pseudomonas fluorescens Wood1R, WGS project CAFF00000000 data, contig NODE_1461_length_59748_cov_14.860112, whole genome shotgun sequence (59778 bp)
Overview 1 RT 1: 8691-12254 bp Neighborhood of RT #1 [8691, 12254] RVT-UG28 Mrr_cat Feature: gene Location: 8691-8822 bp Feature: gene Location: 8869-9054 bp Feature: gene Location: 9437-10921 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 9725-10361 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 972 5-10361 bp Feature: gene Location: 11194-11745 bp Feature: domain Description: Mrr_cat Location: 11230-11566 bp Feature: domain Description: Mrr_cat Location: 112 30-11566 bp Feature: gene Location: 11874-12254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, Mrr_cat (pfam04471)

Seq: CAFF01000327.1 Pseudomonas fluorescens Wood1R, WGS project CAFF00000000 data, contig NODE_96_length_12183_cov_14.141837, whole genome shotgun sequence (12213 bp)
Overview 1 RT 1: 8568-11940 bp Neighborhood of RT #1 [8568, 11940] RVT-Retrons Feature: gene Location: 8568-8840 bp Feature: gene Location: 8904-9293 bp Feature: gene Location: 9369-10499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9504-10065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9504-10065 bp Feature: gene Location: 10619-10822 bp Feature: gene Location: 10855-11940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CAFF01000301.1 Pseudomonas fluorescens Wood1R, WGS project CAFF00000000 data, contig NODE_1044_length_12565_cov_15.495742, whole genome shotgun sequence (12595 bp)
Overview 1 RT 1: 1379-7515 bp Neighborhood of RT #1 [1379, 7515] RVT-UG9 PRK14975 Feature: gene Location: 1379-1651 bp Feature: gene Location: 1847-2512 bp Feature: gene Location: 2912-4753 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3323-3962 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3323-3962 bp Feature: gene Location: 4746-6293 bp Feature: domain Description: PRK14975 Location: 5502-6234 bp Feature: domain Description: PRK14 975 Location: 5502-6234 bp Feature: gene Location: 6589-7515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)