myRT

myRT report for GCA_000286995.2_ASM28699v2

Download annotations/find similar RTs

Seq: AJYM02000045.1 Vibrio breoganii ZF-29 ZF-29_contig_47, whole genome shotgun sequence (1664443 bp)
Overview 1 RT 1: 534554-540049 bp 2 RT 2: 915493-923916 bp 3 RT 3: 1052844-1057990 bp 4 RT 4: 1171285-1175353 bp 5 RT 5: 1249112-1256969 bp Neighborhood of RT #1 [534554, 540072] PRK13960 YjiH RVT-GII GIIM DUF1059 KOG0805 Neighborhood of RT #2 [915493, 923954] HTH_23 RVT_N RVT-GII GIIM REJ PKD LuxR_C_like Neighborhood of RT #3 [1052844, 1058001] YkgJ YeaQ RVT-GII GIIM Tim44 YeiH Neighborhood of RT #4 [1171285, 1175361] PRK04964 DUF4250 RVT-GII GIIM CspC DUF2884 Neighborhood of RT #5 [1249112, 1256989] Flp LC_FACS_bac RVT-GII GIIM PRK00007 sms Feature: gene Location: 534554-535657 bp Ori: OED93970.1 Feature: domain Description: PRK13960 Location: 534557-535655 bp Feature: domain Description: PRK1 3960 Location: 534557-535655 bp Feature: gene Location: 535965-537338 bp Ori: OED93971.1 Feature: domain Description: YjiH Location: 536004-537315 bp Feature: domain Description: YjiH Location: 536004-53731 5 bp Feature: gene Location: 537465-538799 bp Ori: OED93972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537678-538299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537678-538299 bp Feature: domain Description: GIIM Note: maturase Location: 538347-538569 bp Feature: domain Description: GIIM Note: maturase Location: 538347-538569 bp Feature: gene Location: 539586-539822 bp Ori: OED93973.1 Feature: domain Description: DUF1059 Location: 539640-539793 bp Feature: domain Description: DUF1 059 Location: 539640-539793 bp Feature: gene Location: 539842-540072 bp Ori: OED93974.1 Feature: domain Description: KOG0805 Location: 539857-540049 bp Feature: domain Description: KOG0805 Location: 539857-540049 bp Feature: gene Location: 915493-915732 bp Feature: gene Location: 916465-916702 bp Feature: domain Description: HTH_23 Location: 916603-916684 bp Feature: domain Description: HTH_23 Location: 91 6603-91 6684 bp Feature: gene Location: 917434-919065 bp Ori: OED94282.1 Feature: domain Description: RVT_N Location: 917641-917884 bp Feature: domain Description: RVT_N Location: 91 7641 -91 7884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917929-918556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 7929-91 8556 bp Feature: domain Description: GIIM Note: maturase Location: 918616-918841 bp Feature: domain Description: GIIM Note: maturase Location: 91 861 6-91 8841 bp Feature: gene Location: 919506-922220 bp Ori: OED94283.1 Feature: domain Description: REJ Location: 921360-921486 bp Feature: domain Description: REJ Location: 921 360-921 486 bp Feature: domain Description: PKD Location: 921657-921885 bp Feature: domain Description: PKD Location: 921 657-921 885 bp Feature: gene Location: 922794-923954 bp Ori: OED94284.1 Feature: domain Description: LuxR_C_like Location: 923769-923916 bp Feature: domain Description: LuxR_C_like Location: 923769-92391 6 bp Feature: gene Location: 1052844-1053053 bp Ori: OED94386.1 Feature: domain Description: YkgJ Location: 1052919-1053027 bp Feature: domain Description: YkgJ Location: 1 05291 9-1 053027 bp Feature: gene Location: 1053229-1053471 bp Ori: OED94922.1 Feature: domain Description: YeaQ Location: 1053232-1053463 bp Feature: domain Description: YeaQ Location: 1 053232-1 053463 bp Feature: gene Location: 1053851-1055185 bp Ori: OED94387.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054064-1054685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 054064-1 054685 bp Feature: domain Description: GIIM Note: maturase Location: 1054733-1054955 bp Feature: domain Description: GIIM Note: maturase Location: 1 054733-1 054955 bp Feature: gene Location: 1055959-1056834 bp Ori: OED94388.1 Feature: domain Description: Tim44 Location: 1056070-1056832 bp Feature: domain Description: Tim44 Location: 1 056070-1 056832 bp Feature: gene Location: 1057078-1058001 bp Ori: OED94389.1 Feature: domain Description: YeiH Location: 1057162-1057990 bp Feature: domain Description: YeiH Location: 1 0571 62-1 057990 bp Feature: gene Location: 1171285-1171488 bp Ori: OED94475.1 Feature: domain Description: PRK04964 Location: 1171297-1171486 bp Feature: domain Description: PRK04964 Location: 1 1 71 297-1 1 71 486 bp Feature: gene Location: 1171492-1171683 bp Ori: OED94476.1 Feature: domain Description: DUF4250 Location: 1171519-1171678 bp Feature: domain Description: DUF4250 Location: 1 1 71 51 9-1 1 71 678 bp Feature: gene Location: 1171970-1173304 bp Ori: OED94477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1172183-1172804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 721 83-1 1 72804 bp Feature: domain Description: GIIM Note: maturase Location: 1172852-1173074 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72852-1 1 73074 bp Feature: gene Location: 1174098-1174307 bp Ori: OED94478.1 Feature: domain Description: CspC Location: 1174110-1174302 bp Feature: domain Description: CspC Location: 1 1 741 1 0-1 1 74302 bp Feature: gene Location: 1174591-1175361 bp Ori: OED94479.1 Feature: domain Description: DUF2884 Location: 1174684-1175353 bp Feature: domain Description: DUF2884 Location: 1 1 74684-1 1 75353 bp Feature: gene Location: 1249112-1249291 bp Ori: OED94538.1 Feature: domain Description: Flp Location: 1249139-1249268 bp Feature: domain Description: Flp Location: 1 2491 39-1 249268 bp Feature: gene Location: 1249426-1251132 bp Ori: OED94539.1 Feature: domain Description: LC_FACS_bac Location: 1249567-1251079 bp Feature: domain Description: LC_FACS_bac Location: 1 249567-1 251 079 bp Feature: gene Location: 1251224-1252558 bp Ori: OED94540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251437-1252058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 251 437-1 252058 bp Feature: domain Description: GIIM Note: maturase Location: 1252106-1252328 bp Feature: domain Description: GIIM Note: maturase Location: 1 2521 06-1 252328 bp Feature: gene Location: 1253335-1255419 bp Ori: OED94541.1 Feature: domain Description: PRK00007 Location: 1253341-1255399 bp Feature: domain Description: PRK00007 Location: 1 253341 -1 255399 bp Feature: gene Location: 1255610-1256989 bp Ori: OED94542.1 Feature: domain Description: sms Location: 1255613-1256969 bp Feature: domain Description: sms Location: 1 25561 3-1 256969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13960 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional), YjiH (COG3314), RVT-GII, GIIM (pfam08388), DUF1059 (pfam06348), KOG0805 (KOG0805, Carbon-nitrogen hydrolase ), HTH_23 (pfam13384), RVT_N (pfam13655), REJ (pfam02010), PKD (smart00089)
LuxR_C_like (cd06170), YkgJ (COG0727), YeaQ (COG2261), Tim44 (smart00978), YeiH (COG2855), PRK04964 (hypothetical protein; Provisional), DUF4250 (pfam14056), CspC (COG1278), DUF2884 (pfam11101), Flp (COG3847)
LC_FACS_bac (cd05932), PRK00007 (elongation factor G; Reviewed), sms (TIGR00416)

Seq: AJYM02000010.1 Vibrio breoganii ZF-29 ZF-29_contig_114, whole genome shotgun sequence (765326 bp)
Overview 1 RT 1: 191194-196328 bp Neighborhood of RT #1 [191194, 196328] Gph DUF2971 RVT_N RVT-GII GIIM DUF5062 Feature: gene Location: 191194-191904 bp Ori: OED97956.1 Feature: domain Description: Gph Location: 191197-191893 bp Feature: domain Description: Gph Location: 191197-191893 bp Feature: gene Location: 192386-193204 bp Ori: OED97957.1 Feature: domain Description: DUF2971 Location: 192710-192998 bp Feature: domain Description: DUF2 971 Location: 192 710-192 998 bp Feature: gene Location: 193851-195482 bp Ori: OED97958.1 Feature: domain Description: RVT_N Location: 194058-194301 bp Feature: domain Description: RVT_N Location: 194058-194301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194346-194973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194346-194973 bp Feature: domain Description: GIIM Note: maturase Location: 195033-195258 bp Feature: domain Description: GIIM Note: maturase Location: 195033-1952 58 bp Feature: gene Location: 195670-195930 bp Ori: OED97959.1 Feature: domain Description: DUF5062 Location: 195688-195928 bp Feature: domain Description: DUF5062 Location: 195688-19592 8 bp Feature: gene Location: 196119-196328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gph (COG0546), DUF2971 (pfam11185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF5062 (pfam16691)

Seq: AJYM02000030.1 Vibrio breoganii ZF-29 ZF-29_contig_25, whole genome shotgun sequence (1392 bp)
Overview 1 RT 1: 1-1105 bp Neighborhood of RT #1 [1, 1175] RVT-GII GIIM Feature: gene Location: 1-1175 bp Ori: OED95202.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214-835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214-83 5 bp Feature: domain Description: GIIM Note: maturase Location: 883-1105 bp Feature: domain Description: GIIM Note: maturase Location: 883 -1105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJYM02000017.1 Vibrio breoganii ZF-29 ZF-29_contig_140, whole genome shotgun sequence (1386564 bp)
Overview 1 RT 1: 318414-322208 bp 2 RT 2: 1068645-1076162 bp Neighborhood of RT #1 [318414, 322234] DDE_Tnp_1_assoc RVT-GII GIIM atpC Neighborhood of RT #2 [1068645, 1076185] MFS_MdfA_MDR_like MarR RVT-UG8 RVT-UG3 DDE_Tnp_1_assoc YhhI YhhI AzlD Feature: gene Location: 318414-318674 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 318438-318672 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 3184 38-318672 bp Feature: gene Location: 318712-318980 bp Feature: gene Location: 319224-320534 bp Ori: OED97342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319440-320055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3194 4 0-320055 bp Feature: domain Description: GIIM Note: maturase Location: 320106-320307 bp Feature: domain Description: GIIM Note: maturase Location: 320106-320307 bp Feature: gene Location: 321161-321421 bp Feature: gene Location: 321791-322234 bp Ori: OED96463.1 Feature: domain Description: atpC Location: 321815-322208 bp Feature: domain Description: atpC Location: 321815-322208 bp Feature: gene Location: 1068645-1069841 bp Ori: OED97074.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 1068675-1069788 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 1068675-1069788 bp Feature: gene Location: 1069939-1070430 bp Ori: OED97075.1 Feature: domain Description: MarR Location: 1070041-1070416 bp Feature: domain Description: MarR Location: 107004 1-10704 16 bp Feature: gene Location: 1070899-1072848 bp Ori: OED97076.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1071373-1071820 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1071373-1071820 bp Feature: gene Location: 1072849-1074111 bp Ori: OED97077.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1073140-1073623 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 107314 0-1073623 bp Feature: gene Location: 1074539-1075660 bp Ori: OED97078.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 1074563-1074821 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 1074 563-1074 821 bp Feature: domain Description: YhhI Location: 1074962-1075178 bp Feature: domain Description: YhhI Location: 1074 962-1075178 bp Feature: domain Description: YhhI Location: 1075346-1075565 bp Feature: domain Description: YhhI Location: 107534 6-1075565 bp Feature: gene Location: 1075841-1076185 bp Ori: OED97079.1 Feature: domain Description: AzlD Location: 1075856-1076162 bp Feature: domain Description: AzlD Location: 1075856-1076162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), atpC (PRK14736), MFS_MdfA_MDR_like (cd17320), MarR (pfam01047), RVT-UG8, RVT-UG3, YhhI (COG5433), AzlD (pfam05437)

Seq: AJYM02000014.1 Vibrio breoganii ZF-29 ZF-29_contig_13, whole genome shotgun sequence (2174 bp)
Overview 1 RT 1: 122-1529 bp Neighborhood of RT #1 [122, 1753] RVT_N RVT-GII GIIM Feature: gene Location: 122-1753 bp Ori: OED97386.1 Feature: domain Description: RVT_N Location: 329-572 bp Feature: domain Description: RVT_N Location: 329-5 72 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-1244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-1244 bp Feature: domain Description: GIIM Note: maturase Location: 1304-1529 bp Feature: domain Description: GIIM Note: maturase Location: 1304-15 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)