myRT

myRT report for GCA_000287135.2_ASM28713v2

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Seq: AJYV02000048.1 Vibrio anguillarum strain 12B09 12B09_contig_83, whole genome shotgun sequence (434079 bp)
Overview 1 RT 1: 313373-321962 bp Neighborhood of RT #1 [313373, 321967] ABC_ATPase ABC_ATPase AAA_21 RVT-UG5 nitrilase citrate_citG CitX Feature: gene Location: 313373-313723 bp Feature: gene Location: 315050-316816 bp Ori: OEF90783.1 Feature: domain Description: ABC_ATPase Location: 315134-315197 bp Feature: domain Description: ABC_ATPase Location: 31 51 34-31 51 97 bp Feature: domain Description: ABC_ATPase Location: 315968-316169 bp Feature: domain Description: ABC_ATPase Location: 31 5968-31 61 69 bp Feature: domain Description: AAA_21 Location: 316172-316493 bp Feature: domain Description: AAA_21 Location: 31 61 72-31 6493 bp Feature: gene Location: 316813-320016 bp Ori: OEF90784.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 317344-317848 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 7344-31 7848 bp Feature: domain Description: nitrilase Location: 319333-319927 bp Feature: domain Description: nitrilase Location: 31 9333-31 9927 bp Feature: gene Location: 320509-321453 bp Ori: OEF90785.1 Feature: domain Description: citrate_citG Location: 320605-321421 bp Feature: domain Description: citrate_citG Location: 320605-321 421 bp Feature: gene Location: 321431-321967 bp Ori: OEF90786.1 Feature: domain Description: CitX Location: 321434-321962 bp Feature: domain Description: CitX Location: 321 434-321 962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_ATPase (pfam09818), AAA_21 (pfam13304), RVT-UG5, nitrilase (cl11424), citrate_citG (TIGR03125), CitX (pfam03802)

Seq: AJYV02000004.1 Vibrio anguillarum strain 12B09 12B09_contig_103, whole genome shotgun sequence (1126015 bp)
Overview 1 RT 1: 1064033-1073397 bp Neighborhood of RT #1 [1064033, 1073402] INT_ICEBs1_C_like RVT-UG3 RVT-UG8 xerS INT_C_like_1 NodN Feature: gene Location: 1064033-1065529 bp Feature: gene Location: 1065699-1066790 bp Ori: OEF92632.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1066071-1066596 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1066071-1066596 bp Feature: gene Location: 1067423-1068685 bp Ori: OEF92633.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1067714-1068200 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1067714-10682 00 bp Feature: gene Location: 1068612-1070642 bp Ori: OEF92634.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1069167-1069611 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1069167-1069611 bp Feature: gene Location: 1070919-1072238 bp Ori: OEF92635.1 Feature: domain Description: xerS Location: 1071474-1071603 bp Feature: domain Description: xerS Location: 1071474-1071603 bp Feature: domain Description: INT_C_like_1 Location: 1071630-1072158 bp Feature: domain Description: INT_C_like_1 Location: 1071630-1072 158 bp Feature: gene Location: 1072725-1073402 bp Ori: OEF92636.1 Feature: domain Description: NodN Location: 1072950-1073397 bp Feature: domain Description: NodN Location: 1072 950-1073397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-UG3, RVT-UG8, xerS (PRK05084), INT_C_like_1 (cd01184), NodN (cd03450)

Seq: AJYV02000030.1 Vibrio anguillarum strain 12B09 12B09_contig_56, whole genome shotgun sequence (120630 bp)
Overview 1 RT 1: 54415-58269 bp Neighborhood of RT #1 [54415, 58269] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 54415-54723 bp Ori: OEF91356.1 Feature: domain Description: InsE Location: 54418-54712 bp Feature: domain Description: InsE Location: 54418-54712 bp Feature: gene Location: 54720-55124 bp Ori: OEF91357.1 Feature: domain Description: PHA02517 Location: 54777-55101 bp Feature: domain Description: PHA02517 Location: 54777-55101 bp Feature: gene Location: 55765-57288 bp Ori: OEF91358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56038-56770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5603 8-56770 bp Feature: domain Description: GIIM Note: maturase Location: 56842-57043 bp Feature: domain Description: GIIM Note: maturase Location: 56842-57043 bp Feature: gene Location: 57357-57857 bp Feature: domain Description: PHA02517 Location: 57372-57837 bp Feature: domain Description: PHA02517 Location: 573 72-5783 7 bp Feature: gene Location: 57931-58269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AJYV02000005.1 Vibrio anguillarum strain 12B09 12B09_contig_12, whole genome shotgun sequence (3563 bp)
Overview 1 RT 1: 191-2450 bp Neighborhood of RT #1 [191, 2695] PHA02517 RVT-GII GIIM Feature: gene Location: 191-529 bp Feature: gene Location: 603-1103 bp Feature: domain Description: PHA02517 Location: 618-1083 bp Feature: domain Description: PHA02517 Location: 618-1083 bp Feature: gene Location: 1172-2695 bp Ori: OEF91738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445-2177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 5-2177 bp Feature: domain Description: GIIM Note: maturase Location: 2249-2450 bp Feature: domain Description: GIIM Note: maturase Location: 224 9-24 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)