myRT

myRT report for GCA_000287415.1_SM5A14_v1

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Seq: AKZZ01000042.1 Sinorhizobium meliloti 5A14 contig_42, whole genome shotgun sequence (143558 bp)
Overview 1 RT 1: 141308-143556 bp Neighborhood of RT #1 [141308, 143555] HTH_ARSR AraJ RVT-GII Feature: gene Location: 141308-141679 bp Feature: domain Description: HTH_ARSR Location: 141365-141563 bp Feature: domain Description: HTH_ARSR Location: 1 41 365-1 41 563 bp Feature: gene Location: 141769-142953 bp Feature: domain Description: AraJ Location: 141772-142930 bp Feature: domain Description: AraJ Location: 1 41 772-1 42930 bp Feature: gene Location: 143130-143555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143457-143556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 43457-1 43556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII

Seq: AKZZ01000100.1 Sinorhizobium meliloti 5A14 contig_100, whole genome shotgun sequence (5346 bp)
Overview 1 RT 1: 3370-5344 bp Neighborhood of RT #1 [3370, 5343] COG4584 RVT-GII Feature: gene Location: 3370-3921 bp Feature: gene Location: 4004-4687 bp Feature: domain Description: COG4584 Location: 4058-4532 bp Feature: domain Description: COG4584 Location: 4058-4532 bp Feature: gene Location: 4918-5343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5245-5344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 45-5344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII

Seq: AKZZ01000165.1 Sinorhizobium meliloti 5A14 contig_165, whole genome shotgun sequence (3131 bp)
Overview 1 RT 1: 1430-3084 bp Neighborhood of RT #1 [1430, 3128] COG4584 group_II_RT_mat RVT-GII Feature: gene Location: 1430-2506 bp Feature: domain Description: COG4584 Location: 1736-2081 bp Feature: domain Description: COG4584 Location: 173 6-2081 bp Feature: gene Location: 2293-2814 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2305-2641 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23 05-2641 bp Feature: gene Location: 2775-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778-3084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2778-3 084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), group_II_RT_mat (TIGR04416), RVT-GII

Seq: AKZZ01000210.1 Sinorhizobium meliloti 5A14 contig_210, whole genome shotgun sequence (90567 bp)
Overview 1 RT 1: 24861-29253 bp Neighborhood of RT #1 [24861, 29294] WecB Beta_helix RVT-GII Transposase_mut Feature: gene Location: 24861-25037 bp Feature: domain Description: WecB Location: 24894-24978 bp Feature: domain Description: WecB Location: 24 894 -24 978 bp Feature: gene Location: 25160-26515 bp Feature: domain Description: Beta_helix Location: 25280-25433 bp Feature: domain Description: Beta_helix Location: 25280-254 33 bp Feature: gene Location: 27171-28580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27525-28212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27525-28212 bp Feature: gene Location: 28713-28973 bp Feature: gene Location: 29091-29294 bp Feature: domain Description: Transposase_mut Location: 29097-29253 bp Feature: domain Description: Transposase_mut Location: 29097-29253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WecB (COG0381), Beta_helix (pfam13229), RVT-GII, Transposase_mut (pfam00872)

Seq: AKZZ01000215.1 Sinorhizobium meliloti 5A14 contig_215, whole genome shotgun sequence (22894 bp)
Overview 1 RT 1: 20610-22847 bp Neighborhood of RT #1 [20610, 22891] PRK12687 PRK12687 group_II_RT_mat RVT-GII Feature: gene Location: 20610-21797 bp Feature: domain Description: PRK12687 Location: 20613-21219 bp Feature: domain Description: PRK12687 Location: 20613-21219 bp Feature: domain Description: PRK12687 Location: 21468-21792 bp Feature: domain Description: PRK12687 Location: 21468-21792 bp Feature: gene Location: 22056-22577 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 22068-22404 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 22068-22404 bp Feature: gene Location: 22538-22891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22541-22847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225 41-22847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12687 (flagellin; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII