myRT

myRT report for GCA_000287435.1_SM1A42_v1

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Seq: ALAA01000022.1 Sinorhizobium meliloti 1A42 contig_22, whole genome shotgun sequence (26306 bp)
Overview 1 RT 1: 24844-26306 bp Neighborhood of RT #1 [24844, 26305] RVT-GII Feature: gene Location: 24844-25146 bp Feature: gene Location: 25482-25721 bp Feature: gene Location: 26102-26305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26246-26306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26246-26306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ALAA01000071.1 Sinorhizobium meliloti 1A42 contig_71, whole genome shotgun sequence (156353 bp)
Overview 1 RT 1: 2-2090 bp Neighborhood of RT #1 [2, 2206] RVT-GII AraJ HTH_ARSR Feature: gene Location: 2-205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-2 06 bp Feature: gene Location: 561-1745 bp Feature: domain Description: AraJ Location: 564-1722 bp Feature: domain Description: AraJ Location: 564-172 2 bp Feature: gene Location: 1835-2206 bp Feature: domain Description: HTH_ARSR Location: 1892-2090 bp Feature: domain Description: HTH_ARSR Location: 1892 -2 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AraJ (COG2814), HTH_ARSR (smart00418)

Seq: ALAA01000072.1 Sinorhizobium meliloti 1A42 contig_72, whole genome shotgun sequence (9546 bp)
Overview 1 RT 1: 2-3414 bp Neighborhood of RT #1 [2, 3521] RVT-GII NorD MoxR Feature: gene Location: 2-205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-206 bp Feature: gene Location: 698-2698 bp Feature: domain Description: NorD Location: 701-2528 bp Feature: domain Description: NorD Location: 701-2528 bp Feature: gene Location: 2703-3521 bp Feature: domain Description: MoxR Location: 2745-3414 bp Feature: domain Description: MoxR Location: 2745-3 414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NorD (COG4548), MoxR (COG0714)

Seq: ALAA01000199.1 Sinorhizobium meliloti 1A42 contig_199, whole genome shotgun sequence (104847 bp)
Overview 1 RT 1: 1-1469 bp Neighborhood of RT #1 [1, 1477] RVT-GII GIIM MazF DUF3018 Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 18 bp Feature: domain Description: GIIM Note: maturase Location: 472-688 bp Feature: domain Description: GIIM Note: maturase Location: 4 72-688 bp Feature: gene Location: 1137-1340 bp Feature: domain Description: MazF Location: 1140-1251 bp Feature: domain Description: MazF Location: 114 0-1251 bp Feature: gene Location: 1337-1477 bp Feature: domain Description: DUF3018 Location: 1340-1469 bp Feature: domain Description: DUF3018 Location: 134 0-14 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), DUF3018 (pfam11455)

Seq: ALAA01000216.1 Sinorhizobium meliloti 1A42 contig_216, whole genome shotgun sequence (5788 bp)
Overview 1 RT 1: 3471-5636 bp Neighborhood of RT #1 [3471, 5785] PRK13347 PRK13347 RVT-GII GIIM Feature: gene Location: 3471-4532 bp Feature: domain Description: PRK13347 Location: 3633-4326 bp Feature: domain Description: PRK13347 Location: 3633-4326 bp Feature: gene Location: 4568-4846 bp Feature: domain Description: PRK13347 Location: 4574-4841 bp Feature: domain Description: PRK13347 Location: 45 74-4841 bp Feature: gene Location: 4952-5785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4955-5366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 495 5 -5 366 bp Feature: domain Description: GIIM Note: maturase Location: 5420-5636 bp Feature: domain Description: GIIM Note: maturase Location: 5 420-5 636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13347 (coproporphyrinogen III oxidase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: ALAA01000268.1 Sinorhizobium meliloti 1A42 contig_268, whole genome shotgun sequence (26776 bp)
Overview 1 RT 1: 353-7072 bp Neighborhood of RT #1 [353, 7821] COG3905 RVT-Retrons UvrD UvrD UvrD YbjD YbjD Feature: gene Location: 353-613 bp Feature: domain Description: COG3905 Location: 368-602 bp Feature: domain Description: COG3905 Location: 36 8-6 02 bp Feature: gene Location: 982-1155 bp Feature: gene Location: 1275-3008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1410-2037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1410-2037 bp Feature: gene Location: 3542-5464 bp Feature: domain Description: UvrD Location: 3626-3893 bp Feature: domain Description: UvrD Location: 36 26 -3893 bp Feature: domain Description: UvrD Location: 3938-4481 bp Feature: domain Description: UvrD Location: 3938-4481 bp Feature: domain Description: UvrD Location: 5099-5324 bp Feature: domain Description: UvrD Location: 5099-5324 bp Feature: gene Location: 5461-7821 bp Feature: domain Description: YbjD Location: 5464-5635 bp Feature: domain Description: YbjD Location: 546 4-56 35 bp Feature: domain Description: YbjD Location: 6076-7072 bp Feature: domain Description: YbjD Location: 6 076 -7072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3905 (Predicted transcriptional regulator ), RVT-Retrons, UvrD (COG0210), YbjD (COG3593)

Seq: ALAA01000279.1 Sinorhizobium meliloti 1A42 contig_279, whole genome shotgun sequence (40052 bp)
Overview 1 RT 1: 1-3808 bp Neighborhood of RT #1 [1, 3819] RVT-GII GIIM PRK09356 hutH Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: domain Description: GIIM Note: maturase Location: 472-688 bp Feature: domain Description: GIIM Note: maturase Location: 47 2-688 bp Feature: gene Location: 917-2287 bp Feature: domain Description: PRK09356 Location: 1076-2279 bp Feature: domain Description: PRK09356 Location: 107 6-227 9 bp Feature: gene Location: 2284-3819 bp Feature: domain Description: hutH Location: 2293-3808 bp Feature: domain Description: hutH Location: 2293-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: ALAA01000280.1 Sinorhizobium meliloti 1A42 contig_280, whole genome shotgun sequence (1506 bp)
Overview 1 RT 1: 65-1097 bp Neighborhood of RT #1 [65, 1246] RVT-GII GIIM Feature: gene Location: 65-1246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209-8 27 bp Feature: domain Description: GIIM Note: maturase Location: 881-1097 bp Feature: domain Description: GIIM Note: maturase Location: 8 8 1-1097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)