myRT

myRT report for GCA_000287495.1_SMC0438LL_v1

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Seq: AKZS01000071.1 Sinorhizobium meliloti C0438LL contig_71, whole genome shotgun sequence (11068 bp)
Overview 1 RT 1: 1-3056 bp Neighborhood of RT #1 [1, 3058] RVT-GII GIIM nifX COG5420 Feature: gene Location: 1-177 bp Feature: gene Location: 183-332 bp Feature: gene Location: 393-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1 260 bp Feature: domain Description: GIIM Note: maturase Location: 1344-1566 bp Feature: domain Description: GIIM Note: maturase Location: 1 344-1 566 bp Feature: gene Location: 1875-2375 bp Feature: domain Description: nifX Location: 1953-2322 bp Feature: domain Description: nifX Location: 1 953-2322 bp Feature: gene Location: 2918-3058 bp Feature: domain Description: COG5420 Location: 2921-3056 bp Feature: domain Description: COG5420 Location: 2921 -3056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nifX (TIGR02663), COG5420 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388)

Seq: AKZS01000277.1 Sinorhizobium meliloti C0438LL contig_277, whole genome shotgun sequence (3349 bp)
Overview 1 RT 1: 132-3346 bp Neighborhood of RT #1 [132, 3346] IS5 IS5 RVT-GII GIIM Feature: gene Location: 132-1445 bp Feature: domain Description: IS5 Location: 135-870 bp Feature: domain Description: IS5 Location: 135-870 bp Feature: domain Description: IS5 Location: 957-1440 bp Feature: domain Description: IS5 Location: 957-1440 bp Feature: gene Location: 1698-2957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914-2565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914-2 565 bp Feature: domain Description: GIIM Note: maturase Location: 2649-2871 bp Feature: domain Description: GIIM Note: maturase Location: 2 649-2 871 bp Feature: gene Location: 3173-3346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: AKZS01000357.1 Sinorhizobium meliloti C0438LL contig_357, whole genome shotgun sequence (7504 bp)
Overview 1 RT 1: 1774-6921 bp Neighborhood of RT #1 [1774, 6921] PinE Zn_ribbon_recom InsE RVT-GII Feature: gene Location: 1774-3864 bp Feature: domain Description: PinE Location: 1816-2404 bp Feature: domain Description: PinE Location: 1816-2404 bp Feature: domain Description: Zn_ribbon_recom Location: 2758-2932 bp Feature: domain Description: Zn_ribbon_recom Location: 2758-293 2 bp Feature: gene Location: 4025-4483 bp Feature: domain Description: InsE Location: 4070-4241 bp Feature: domain Description: InsE Location: 4070-4241 bp Feature: gene Location: 4596-6419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5334-6024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 3 4-6024 bp Feature: gene Location: 6467-6658 bp Feature: gene Location: 6694-6921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), InsE (COG2963), RVT-GII