myRT

myRT report for GCA_000287515.2_SMAK75_v1

Download annotations/find similar RTs

Seq: AKZU01000386.1 Sinorhizobium meliloti AK75 contig_386, whole genome shotgun sequence (2921 bp)
Overview 1 RT 1: 2-2663 bp Neighborhood of RT #1 [2, 2779] RVT-GII RVT-GII AraJ HTH_ARSR Feature: gene Location: 2-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-290 bp Feature: gene Location: 379-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-928 bp Feature: gene Location: 1134-2318 bp Feature: domain Description: AraJ Location: 1137-2295 bp Feature: domain Description: AraJ Location: 1 1 37-2295 bp Feature: gene Location: 2408-2779 bp Feature: domain Description: HTH_ARSR Location: 2465-2663 bp Feature: domain Description: HTH_ARSR Location: 2465-2663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraJ (COG2814), RVT-GII, HTH_ARSR (smart00418)

Seq: AKZU01000439.1 Sinorhizobium meliloti AK75 contig_439, whole genome shotgun sequence (37812 bp)
Overview 1 RT 1: 11307-22380 bp Neighborhood of RT #1 [11307, 22380] NERD STKc_PknB_like STKc_PknB_like KOG1802 KOG1802 RVT-Retrons Trypsin_2 COG3183 Feature: gene Location: 11307-12680 bp Feature: gene Location: 12784-17586 bp Feature: domain Description: NERD Location: 12829-13159 bp Feature: domain Description: NERD Location: 12 82 9-13159 bp Feature: domain Description: STKc_PknB_like Location: 13693-14038 bp Feature: domain Description: STKc_PknB_like Location: 13693-14038 bp Feature: domain Description: STKc_PknB_like Location: 14482-14758 bp Feature: domain Description: STKc_PknB_like Location: 14482 -14758 bp Feature: domain Description: KOG1802 Location: 15856-16060 bp Feature: domain Description: KOG1802 Location: 15856-16060 bp Feature: domain Description: KOG1802 Location: 16573-17470 bp Feature: domain Description: KOG1802 Location: 16573-17470 bp Feature: gene Location: 18246-19838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18414-19005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18414-19005 bp Feature: domain Description: Trypsin_2 Location: 19353-19761 bp Feature: domain Description: Trypsin_2 Location: 19353-19761 bp Feature: gene Location: 20205-22130 bp Feature: domain Description: COG3183 Location: 21750-21984 bp Feature: domain Description: COG3183 Location: 2 1750-2 1984 bp Feature: gene Location: 22180-22380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), STKc_PknB_like (cd14014), KOG1802 (KOG1802, RNA helicase nonsense mRNA reducing factor (pNORF1) ), RVT-Retrons, Trypsin_2 (pfam13365), COG3183 (Predicted restriction endonuclease, HNH family )