myRT

myRT report for GCA_000289055.1_ASM28905v1

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Seq: ALRD01000047.1 Streptococcus agalactiae BSU442 ctg7180000002785, whole genome shotgun sequence (6891 bp)
Overview 1 RT 1: 42-5419 bp Neighborhood of RT #1 [42, 5424] RVT-GII GIIM Branch_AA_trans PRK12267 Feature: gene Location: 42-311 bp Feature: gene Location: 308-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 2-1 1 27 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 81 -1 307 bp Feature: gene Location: 1894-3231 bp Feature: domain Description: Branch_AA_trans Location: 1903-3187 bp Feature: domain Description: Branch_AA_trans Location: 1 903-31 87 bp Feature: gene Location: 3427-5424 bp Feature: domain Description: PRK12267 Location: 3436-5419 bp Feature: domain Description: PRK1 2267 Location: 3436-541 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Branch_AA_trans (pfam05525), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000018.1 Streptococcus agalactiae BSU442 ctg7180000002756, whole genome shotgun sequence (13345 bp)
Overview 1 RT 1: 9860-13304 bp Neighborhood of RT #1 [9860, 13304] HTH_XRE Sugar_transport RVT-GII GIIM Feature: gene Location: 9860-10522 bp Feature: domain Description: HTH_XRE Location: 9875-10040 bp Feature: domain Description: HTH_XRE Location: 9875-10040 bp Feature: gene Location: 10578-11444 bp Feature: domain Description: Sugar_transport Location: 10593-11433 bp Feature: domain Description: Sugar_transport Location: 10593-11433 bp Feature: gene Location: 12028-13038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12232-12847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 32 -12 847 bp Feature: domain Description: GIIM Note: maturase Location: 12901-13027 bp Feature: domain Description: GIIM Note: maturase Location: 12 901-1302 7 bp Feature: gene Location: 13035-13304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sugar_transport (pfam06800), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: ALRD01000071.1 Streptococcus agalactiae BSU442 ctg7180000002809, whole genome shotgun sequence (44071 bp)
Overview 1 RT 1: 501-3265 bp Neighborhood of RT #1 [501, 3288] RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 501-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-13 20 bp Feature: domain Description: GIIM Note: maturase Location: 1374-1590 bp Feature: domain Description: GIIM Note: maturase Location: 13 74-1590 bp Feature: gene Location: 1994-2473 bp Feature: domain Description: PRK08295 Location: 2009-2234 bp Feature: domain Description: PRK08295 Location: 2009-223 4 bp Feature: gene Location: 2596-3288 bp Feature: domain Description: PhoE Location: 2605-3265 bp Feature: domain Description: PhoE Location: 2605-3 265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000045.1 Streptococcus agalactiae BSU442 ctg7180000002783, whole genome shotgun sequence (41770 bp)
Overview 1 RT 1: 42-5505 bp Neighborhood of RT #1 [42, 5531] RVT-GII GIIM PRK02406 pyr_form_ly_1 Feature: gene Location: 42-311 bp Feature: gene Location: 308-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: gene Location: 1940-3049 bp Feature: domain Description: PRK02406 Location: 2012-3029 bp Feature: domain Description: PRK024 06 Location: 2012-3029 bp Feature: gene Location: 3219-5531 bp Feature: domain Description: pyr_form_ly_1 Location: 3261-5505 bp Feature: domain Description: pyr_form_ly_1 Location: 3261-5505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02406 (DNA polymerase IV; Validated), RVT-GII, GIIM (pfam08388), pyr_form_ly_1 (TIGR01255)

Seq: ALRD01000012.1 Streptococcus agalactiae BSU442 ctg7180000002750, whole genome shotgun sequence (30914 bp)
Overview 1 RT 1: 26943-30226 bp Neighborhood of RT #1 [26943, 30414] MurE COG3442 RVT-GII GIIM Feature: gene Location: 26943-28286 bp Feature: domain Description: MurE Location: 26976-28281 bp Feature: domain Description: MurE Location: 26976-28281 bp Feature: gene Location: 28286-29071 bp Feature: domain Description: COG3442 Location: 28334-29060 bp Feature: domain Description: COG3442 Location: 28334-29060 bp Feature: gene Location: 29137-30414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29341-29956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29341-2995 6 bp Feature: domain Description: GIIM Note: maturase Location: 30010-30226 bp Feature: domain Description: GIIM Note: maturase Location: 30010-30226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000009.1 Streptococcus agalactiae BSU442 ctg7180000002747, whole genome shotgun sequence (25423 bp)
Overview 1 RT 1: 22129-25382 bp Neighborhood of RT #1 [22129, 25382] YbaK_deacylase NDUFA9_like_SDR_a RVT-GII GIIM Feature: gene Location: 22129-22602 bp Feature: domain Description: YbaK_deacylase Location: 22165-22594 bp Feature: domain Description: YbaK_deacylase Location: 2216 5-22594 bp Feature: gene Location: 22897-23514 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 22900-23479 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 22900-23479 bp Feature: gene Location: 24106-25116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24310-24925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24310-24925 bp Feature: domain Description: GIIM Note: maturase Location: 24979-25105 bp Feature: domain Description: GIIM Note: maturase Location: 24979-25105 bp Feature: gene Location: 25113-25382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbaK_deacylase (cd00002), NDUFA9_like_SDR_a (cd05271), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000076.1 Streptococcus agalactiae BSU442 ctg7180000002814, whole genome shotgun sequence (10708 bp)
Overview 1 RT 1: 42-3803 bp Neighborhood of RT #1 [42, 3811] RVT-GII GIIM Rfe PRK02315 Feature: gene Location: 42-311 bp Feature: gene Location: 308-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: gene Location: 1894-3054 bp Feature: domain Description: Rfe Location: 1915-2875 bp Feature: domain Description: Rfe Location: 1915-287 5 bp Feature: gene Location: 3056-3811 bp Feature: domain Description: PRK02315 Location: 3059-3803 bp Feature: domain Description: PRK02315 Location: 3059-3803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rfe (COG0472), PRK02315 (adaptor protein MecA), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000027.1 Streptococcus agalactiae BSU442 ctg7180000002765, whole genome shotgun sequence (11793 bp)
Overview 1 RT 1: 501-3865 bp Neighborhood of RT #1 [501, 3873] RVT-GII GIIM BaeS OmpR Feature: gene Location: 501-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1320 bp Feature: domain Description: GIIM Note: maturase Location: 1374-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1374-1590 bp Feature: gene Location: 1854-3218 bp Feature: domain Description: BaeS Location: 2193-3207 bp Feature: domain Description: BaeS Location: 2193-3207 bp Feature: gene Location: 3202-3873 bp Feature: domain Description: OmpR Location: 3205-3865 bp Feature: domain Description: OmpR Location: 3205-38 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000066.1 Streptococcus agalactiae BSU442 ctg7180000002804, whole genome shotgun sequence (43245 bp)
Overview 1 RT 1: 42-4502 bp Neighborhood of RT #1 [42, 4504] RVT-GII GIIM YfcC PRK12353 Feature: gene Location: 42-311 bp Feature: gene Location: 308-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: gene Location: 1931-3484 bp Feature: domain Description: YfcC Location: 1958-3479 bp Feature: domain Description: YfcC Location: 19 58-3479 bp Feature: gene Location: 3578-4504 bp Feature: domain Description: PRK12353 Location: 3584-4502 bp Feature: domain Description: PRK12353 Location: 3584-4502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfcC (COG1288), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000016.1 Streptococcus agalactiae BSU442 ctg7180000002754, whole genome shotgun sequence (29727 bp)
Overview 1 RT 1: 26647-29686 bp Neighborhood of RT #1 [26647, 29686] SrtA VOC_Bs_YwkD_like RVT-GII GIIM Feature: gene Location: 26647-27390 bp Feature: domain Description: SrtA Location: 26701-27322 bp Feature: domain Description: SrtA Location: 26701-27322 bp Feature: gene Location: 27406-27819 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 27421-27817 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 27421-27817 bp Feature: gene Location: 28410-29420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28614-29229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28614-29229 bp Feature: domain Description: GIIM Note: maturase Location: 29283-29409 bp Feature: domain Description: GIIM Note: maturase Location: 29283-29409 bp Feature: gene Location: 29417-29686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SrtA (COG3764), VOC_Bs_YwkD_like (cd08352), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000037.1 Streptococcus agalactiae BSU442 ctg7180000002775, whole genome shotgun sequence (42427 bp)
Overview 1 RT 1: 25924-30133 bp Neighborhood of RT #1 [25924, 30135] EcCorA_ZntB-like_u2 rpsR RVT-GII GIIM PRK07275 rpsF Feature: gene Location: 25924-26868 bp Feature: domain Description: EcCorA_ZntB-like_u2 Location: 25993-26866 bp Feature: domain Description: EcCorA_ZntB-like_u2 Location: 25993-26866 bp Feature: gene Location: 27038-27277 bp Feature: domain Description: rpsR Location: 27047-27272 bp Feature: domain Description: rpsR Location: 27047-27272 bp Feature: gene Location: 27445-28764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27745-28378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27745-28378 bp Feature: domain Description: GIIM Note: maturase Location: 28447-28669 bp Feature: domain Description: GIIM Note: maturase Location: 28447-28669 bp Feature: gene Location: 29345-29836 bp Feature: domain Description: PRK07275 Location: 29348-29834 bp Feature: domain Description: PRK07275 Location: 29348-29834 bp Feature: gene Location: 29848-30135 bp Feature: domain Description: rpsF Location: 29851-30133 bp Feature: domain Description: rpsF Location: 29851-30133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EcCorA_ZntB-like_u2 (cd12827), rpsR (PRK00391), RVT-GII, GIIM (pfam08388), PRK07275 (single-stranded DNA-binding protein; Provisional), rpsF (PRK14074)

Seq: ALRD01000060.1 Streptococcus agalactiae BSU442 ctg7180000002798, whole genome shotgun sequence (6867 bp)
Overview 1 RT 1: 42-3986 bp Neighborhood of RT #1 [42, 3991] RVT-GII GIIM CutC PRK05355 Feature: gene Location: 42-311 bp Feature: gene Location: 308-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 -112 7 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1307 bp Feature: gene Location: 2132-2767 bp Feature: domain Description: CutC Location: 2141-2759 bp Feature: domain Description: CutC Location: 2141-2759 bp Feature: gene Location: 2900-3991 bp Feature: domain Description: PRK05355 Location: 2906-3986 bp Feature: domain Description: PRK05355 Location: 2906-3986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CutC (pfam03932), PRK05355 (3-phosphoserine/phosphohydroxythreonine transaminase), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000041.1 Streptococcus agalactiae BSU442 ctg7180000002779, whole genome shotgun sequence (79693 bp)
Overview 1 RT 1: 76124-79005 bp Neighborhood of RT #1 [76124, 79193] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Feature: gene Location: 76124-76801 bp Feature: domain Description: DUF4956 Location: 76211-76574 bp Feature: domain Description: DUF4956 Location: 76211-76574 bp Feature: gene Location: 76853-77464 bp Feature: domain Description: PolyPPase_VTC_like Location: 76856-77429 bp Feature: domain Description: PolyPPase_VTC_like Location: 76856-77429 bp Feature: gene Location: 77916-79193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78120-78735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78120-78735 bp Feature: domain Description: GIIM Note: maturase Location: 78789-79005 bp Feature: domain Description: GIIM Note: maturase Location: 78789-79005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), RVT-GII, GIIM (pfam08388)

Seq: ALRD01000070.1 Streptococcus agalactiae BSU442 ctg7180000002808, whole genome shotgun sequence (118577 bp)
Overview 1 RT 1: 114027-118536 bp Neighborhood of RT #1 [114027, 118536] Gph Glyco_hydro_3 RVT-GII GIIM Feature: gene Location: 114027-114839 bp Feature: domain Description: Gph Location: 114369-114723 bp Feature: domain Description: Gph Location: 114 369-114 723 bp Feature: gene Location: 114855-116645 bp Feature: domain Description: Glyco_hydro_3 Location: 114945-115902 bp Feature: domain Description: Glyco_hydro_3 Location: 114 945-115902 bp Feature: gene Location: 117260-118270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117464-118079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117464-118079 bp Feature: domain Description: GIIM Note: maturase Location: 118133-118259 bp Feature: domain Description: GIIM Note: maturase Location: 118133-118259 bp Feature: gene Location: 118267-118536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gph (COG0546), Glyco_hydro_3 (pfam00933), RVT-GII, GIIM (pfam08388)