myRT

myRT report for GCA_000289375.1_ASM28937v1

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Seq: ALSD01000027.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002348, whole genome shotgun sequence (13207 bp)
Overview 1 RT 1: 9187-12782 bp Neighborhood of RT #1 [9187, 13147] CelB CelA RVT_N RVT-GII GIIM Feature: gene Location: 9187-10488 bp Ori: EPU36808.1 Feature: domain Description: CelB Location: 9193-10474 bp Feature: domain Description: CelB Location: 91 93-1 0474 bp Feature: gene Location: 10490-10810 bp Ori: EPU36809.1 Feature: domain Description: CelA Location: 10493-10790 bp Feature: domain Description: CelA Location: 1 0493-1 0790 bp Feature: gene Location: 11426-13147 bp Ori: EPU36811.1 Feature: domain Description: RVT_N Location: 11546-11786 bp Feature: domain Description: RVT_N Location: 1 1 546-1 1 786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11834-12494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 834-1 2494 bp Feature: domain Description: GIIM Note: maturase Location: 12563-12782 bp Feature: domain Description: GIIM Note: maturase Location: 1 2563-1 2782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CelB (COG1455), CelA (TIGR03030), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALSD01000081.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002402, whole genome shotgun sequence (71085 bp)
Overview 1 RT 1: 863-3018 bp Neighborhood of RT #1 [863, 3041] RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 863-1531 bp Ori: EPU32239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1334 bp Feature: domain Description: GIIM Note: maturase Location: 112 7-1334 bp Feature: gene Location: 1747-2226 bp Ori: EPU32186.1 Feature: domain Description: PRK08295 Location: 1762-1987 bp Feature: domain Description: PRK082 95 Location: 1762 -1987 bp Feature: gene Location: 2349-3041 bp Ori: EPU32187.1 Feature: domain Description: PhoE Location: 2358-3018 bp Feature: domain Description: PhoE Location: 2 358-3018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406)

Seq: ALSD01000026.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002347, whole genome shotgun sequence (30832 bp)
Overview 1 RT 1: 7862-17360 bp 2 RT 2: 24835-29961 bp Neighborhood of RT #1 [7862, 17389] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Neighborhood of RT #2 [24835, 30326] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 7862-8161 bp Feature: gene Location: 8232-9041 bp Feature: gene Location: 9175-10833 bp Ori: EPU36861.1 Feature: domain Description: RVT_N Location: 9220-9463 bp Feature: domain Description: RVT_N Location: 9220-9463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9508-10156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9508-10156 bp Feature: domain Description: GIIM Note: maturase Location: 10213-10441 bp Feature: domain Description: GIIM Note: maturase Location: 10213 -10441 bp Feature: gene Location: 10830-10940 bp Feature: gene Location: 11393-17389 bp Ori: EPU36863.1 Feature: domain Description: N6_Mtase Location: 13406-13997 bp Feature: domain Description: N6_Mtase Location: 13 406-13 997 bp Feature: domain Description: COG4646 Location: 14588-16892 bp Feature: domain Description: COG4646 Location: 14588-16892 bp Feature: domain Description: KOG0390 Location: 17162-17360 bp Feature: domain Description: KOG03 90 Location: 17162-173 60 bp Feature: gene Location: 24835-27636 bp Ori: EPU36870.1 Feature: domain Description: Peptidase_M23 Location: 26278-26491 bp Feature: domain Description: Peptidase_M23 Location: 26278-26491 bp Feature: domain Description: Phage_lysozyme2 Location: 26632-27145 bp Feature: domain Description: Phage_lysozyme2 Location: 2663 2-27145 bp Feature: domain Description: PRK08581 Location: 27262-27598 bp Feature: domain Description: PRK08581 Location: 27262-27598 bp Feature: gene Location: 27638-28600 bp Ori: EPU36871.1 Feature: domain Description: TraC-F-type Location: 27731-28427 bp Feature: domain Description: TraC-F-type Location: 2773 1-28427 bp Feature: gene Location: 28605-30326 bp Ori: EPU36872.1 Feature: domain Description: RVT_N Location: 28725-28965 bp Feature: domain Description: RVT_N Location: 28725-28965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29013-29673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29013 -29673 bp Feature: domain Description: GIIM Note: maturase Location: 29742-29961 bp Feature: domain Description: GIIM Note: maturase Location: 29742-29961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746)

Seq: ALSD01000084.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002405, whole genome shotgun sequence (101241 bp)
Overview 1 RT 1: 863-3309 bp Neighborhood of RT #1 [863, 3311] RVT-GII GIIM YcgQ YraQ Feature: gene Location: 863-1531 bp Ori: EPU31700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1343 bp Feature: domain Description: GIIM Note: maturase Location: 1127-134 3 bp Feature: gene Location: 1597-2409 bp Ori: EPU31622.1 Feature: domain Description: YcgQ Location: 1600-2407 bp Feature: domain Description: YcgQ Location: 1600-24 07 bp Feature: gene Location: 2409-3311 bp Ori: EPU31623.1 Feature: domain Description: YraQ Location: 2412-3309 bp Feature: domain Description: YraQ Location: 24 12-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YcgQ (COG3689), YraQ (COG0701)

Seq: ALSD01000030.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002351, whole genome shotgun sequence (5589 bp)
Overview 1 RT 1: 507-3691 bp Neighborhood of RT #1 [507, 3729] RVT_N RVT-GII GIIM CelC DeoR Feature: gene Location: 507-2228 bp Ori: EPU36571.1 Feature: domain Description: RVT_N Location: 627-867 bp Feature: domain Description: RVT_N Location: 627-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915 -15 75 bp Feature: domain Description: GIIM Note: maturase Location: 1644-1863 bp Feature: domain Description: GIIM Note: maturase Location: 1644-1863 bp Feature: gene Location: 2300-2542 bp Ori: EPU36567.1 Feature: domain Description: CelC Location: 2318-2528 bp Feature: domain Description: CelC Location: 2318-25 28 bp Feature: gene Location: 2746-3729 bp Ori: EPU36568.1 Feature: domain Description: DeoR Location: 2755-3691 bp Feature: domain Description: DeoR Location: 275 5 -3691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CelC (COG1447), DeoR (COG2390)

Seq: ALSD01000064.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002385, whole genome shotgun sequence (85620 bp)
Overview 1 RT 1: 863-2312 bp Neighborhood of RT #1 [863, 2312] RVT-GII GIIM Feature: gene Location: 863-1531 bp Ori: EPU34222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86 6 -1073 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1343 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1343 bp Feature: gene Location: 1711-2061 bp Feature: gene Location: 2154-2312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ALSD01000048.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002369, whole genome shotgun sequence (68744 bp)
Overview 1 RT 1: 64679-68319 bp Neighborhood of RT #1 [64679, 68684] PrgI TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 64679-65032 bp Ori: EPU35644.1 Feature: domain Description: PrgI Location: 64691-64964 bp Feature: domain Description: PrgI Location: 64691-64964 bp Feature: gene Location: 64989-66482 bp Ori: EPU35645.1 Feature: domain Description: TraC-F-type Location: 65388-66171 bp Feature: domain Description: TraC-F-type Location: 65388-6617 1 bp Feature: gene Location: 66963-68684 bp Ori: EPU35646.1 Feature: domain Description: RVT_N Location: 67083-67323 bp Feature: domain Description: RVT_N Location: 67 083-67 323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67371-68031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67 37 1-68031 bp Feature: domain Description: GIIM Note: maturase Location: 68100-68319 bp Feature: domain Description: GIIM Note: maturase Location: 68100-68319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALSD01000041.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002362, whole genome shotgun sequence (50017 bp)
Overview 1 RT 1: 45718-49789 bp Neighborhood of RT #1 [45718, 49977] Cof PRK10416 RVT-GII GIIM Feature: gene Location: 45718-46542 bp Ori: EPU36082.1 Feature: domain Description: Cof Location: 45727-46528 bp Feature: domain Description: Cof Location: 45727-46528 bp Feature: gene Location: 46542-48152 bp Ori: EPU36083.1 Feature: domain Description: PRK10416 Location: 46866-48141 bp Feature: domain Description: PRK10416 Location: 468 66-48 141 bp Feature: gene Location: 49309-49977 bp Ori: EPU36123.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49312-49519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49312-49519 bp Feature: domain Description: GIIM Note: maturase Location: 49573-49789 bp Feature: domain Description: GIIM Note: maturase Location: 49573-4978 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), RVT-GII, GIIM (pfam08388)

Seq: ALSD01000042.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002363, whole genome shotgun sequence (62382 bp)
Overview 1 RT 1: 41-4761 bp Neighborhood of RT #1 [41, 4781] RVT-GII GIIM lipoyltrans PRK11856 lipoamide_DH Feature: gene Location: 41-709 bp Ori: EPU35982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-251 bp Feature: domain Description: GIIM Note: maturase Location: 305-521 bp Feature: domain Description: GIIM Note: maturase Location: 305-521 bp Feature: gene Location: 1937-2926 bp Ori: EPU35940.1 Feature: domain Description: lipoyltrans Location: 1952-2900 bp Feature: domain Description: lipoyltrans Location: 19 52-29 00 bp Feature: gene Location: 3024-4781 bp Ori: EPU35941.1 Feature: domain Description: PRK11856 Location: 3027-3375 bp Feature: domain Description: PRK11856 Location: 3027-3375 bp Feature: domain Description: lipoamide_DH Location: 3402-4761 bp Feature: domain Description: lipoamide_DH Location: 3402-4761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350)

Seq: ALSD01000055.1 Streptococcus agalactiae MRI Z1-213 ctg7180000002376, whole genome shotgun sequence (3397 bp)
Overview 1 RT 1: 863-3306 bp Neighborhood of RT #1 [863, 3323] RVT-GII GIIM BaeS Feature: gene Location: 863-1531 bp Ori: EPU35043.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866-10 73 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1343 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1343 bp Feature: gene Location: 1609-2217 bp Feature: gene Location: 2310-3323 bp Ori: EPU35042.1 Feature: domain Description: BaeS Location: 2466-3306 bp Feature: domain Description: BaeS Location: 2466-3306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BaeS (COG0642)