myRT

myRT report for GCA_000289755.1_ASM28975v1

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Seq: ALQD01000089.1 Streptococcus agalactiae FSL C1-494 ctg120003231824, whole genome shotgun sequence (97041 bp)
Overview 1 RT 1: 87240-92226 bp Neighborhood of RT #1 [87240, 92252] HTH_XRE RVT-Retrons ImmA COG2932 Feature: gene Location: 87240-87479 bp Feature: gene Location: 88087-88431 bp Feature: domain Description: HTH_XRE Location: 88102-88270 bp Feature: domain Description: HTH_XRE Location: 881 02-88270 bp Feature: gene Location: 88743-90566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88869-89466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88869-89466 bp Feature: gene Location: 90698-91555 bp Feature: domain Description: ImmA Location: 90803-91187 bp Feature: domain Description: ImmA Location: 90803-91 1 87 bp Feature: gene Location: 91566-92252 bp Feature: domain Description: COG2932 Location: 91611-92226 bp Feature: domain Description: COG2932 Location: 91 61 1 -92226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ImmA (COG2856), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )

Seq: ALQD01000084.1 Streptococcus agalactiae FSL C1-494 ctg120003231819, whole genome shotgun sequence (66130 bp)
Overview 1 RT 1: 1-2276 bp Neighborhood of RT #1 [1, 2299] RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 1-789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-331 bp Feature: domain Description: GIIM Note: maturase Location: 385-601 bp Feature: domain Description: GIIM Note: maturase Location: 385-601 bp Feature: gene Location: 1005-1484 bp Feature: domain Description: PRK08295 Location: 1020-1245 bp Feature: domain Description: PRK082 95 Location: 102 0-12 45 bp Feature: gene Location: 1607-2299 bp Feature: domain Description: PhoE Location: 1616-2276 bp Feature: domain Description: PhoE Location: 1616-2 2 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), RVT-GII, GIIM (pfam08388)

Seq: ALQD01000054.1 Streptococcus agalactiae FSL C1-494 ctg120003231789, whole genome shotgun sequence (25350 bp)
Overview 1 RT 1: 5190-14687 bp Neighborhood of RT #1 [5190, 14716] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Feature: gene Location: 5190-5489 bp Feature: gene Location: 5559-6368 bp Feature: gene Location: 6502-8160 bp Feature: RT Description: RVT_N Location: 6547-6790 bp Feature: RT Description: RVT_N Location: 6547-6790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6835-7483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 5-7483 bp Feature: domain Description: GIIM Note: maturase Location: 7540-7768 bp Feature: domain Description: GIIM Note: maturase Location: 7540-7768 bp Feature: gene Location: 8157-8267 bp Feature: gene Location: 8720-14716 bp Feature: domain Description: N6_Mtase Location: 10730-11321 bp Feature: domain Description: N6_Mtase Location: 1073 0-113 21 bp Feature: domain Description: COG4646 Location: 11912-14219 bp Feature: domain Description: COG4646 Location: 11912-14219 bp Feature: domain Description: KOG0390 Location: 14486-14687 bp Feature: domain Description: KOG03 90 Location: 14486-14687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )