myRT

myRT report for GCA_000289835.1_ASM28983v1

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Seq: ALQG01000085.1 Streptococcus agalactiae FSL S3-170 ctg7180000007814, whole genome shotgun sequence (38581 bp)
Overview 1 RT 1: 34484-38147 bp Neighborhood of RT #1 [34484, 38512] PrgI AAA_10 RVT_N RVT-GII GIIM Feature: gene Location: 34484-34852 bp Feature: domain Description: PrgI Location: 34517-34700 bp Feature: domain Description: PrgI Location: 3451 7-34700 bp Feature: gene Location: 34833-36305 bp Feature: domain Description: AAA_10 Location: 36135-36294 bp Feature: domain Description: AAA_1 0 Location: 361 35-36294 bp Feature: gene Location: 36839-38512 bp Feature: RT Description: RVT_N Location: 36911-37151 bp Feature: RT Description: RVT_N Location: 3691 1 -371 51 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37199-37859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 99-37859 bp Feature: domain Description: GIIM Note: maturase Location: 37928-38147 bp Feature: domain Description: GIIM Note: maturase Location: 37928-381 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALQG01000018.1 Streptococcus agalactiae FSL S3-170 ctg7180000007747, whole genome shotgun sequence (15862 bp)
Overview 1 RT 1: 12448-15595 bp Neighborhood of RT #1 [12448, 15595] TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 12448-12657 bp Feature: gene Location: 12662-13642 bp Feature: domain Description: TraC-F-type Location: 12905-13469 bp Feature: domain Description: TraC-F-type Location: 12 905-13469 bp Feature: gene Location: 13647-15320 bp Feature: RT Description: RVT_N Location: 13719-13959 bp Feature: RT Description: RVT_N Location: 13719-13959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14007-14667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14007-14667 bp Feature: domain Description: GIIM Note: maturase Location: 14736-14955 bp Feature: domain Description: GIIM Note: maturase Location: 14736-14955 bp Feature: gene Location: 15479-15595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALQG01000028.1 Streptococcus agalactiae FSL S3-170 ctg7180000007757, whole genome shotgun sequence (8526 bp)
Overview 1 RT 1: 543-5765 bp Neighborhood of RT #1 [543, 5836] RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Feature: gene Location: 543-2216 bp Feature: RT Description: RVT_N Location: 615-855 bp Feature: RT Description: RVT_N Location: 615-855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903 -1563 bp Feature: domain Description: GIIM Note: maturase Location: 1632-1851 bp Feature: domain Description: GIIM Note: maturase Location: 163 2-1851 bp Feature: gene Location: 2221-3189 bp Feature: domain Description: TraC-F-type Location: 2305-3037 bp Feature: domain Description: TraC-F-type Location: 23 05-3 03 7 bp Feature: gene Location: 3206-5836 bp Feature: domain Description: Peptidase_M23 Location: 4484-4706 bp Feature: domain Description: Peptidase_M23 Location: 4484-4706 bp Feature: domain Description: Phage_lysozyme2 Location: 4847-5363 bp Feature: domain Description: Phage_lysozyme2 Location: 4847-53 63 bp Feature: domain Description: PRK08581 Location: 5477-5765 bp Feature: domain Description: PRK08581 Location: 5477-5765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALQG01000062.1 Streptococcus agalactiae FSL S3-170 ctg7180000007791, whole genome shotgun sequence (25716 bp)
Overview 1 RT 1: 10653-20179 bp Neighborhood of RT #1 [10653, 20179] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Feature: gene Location: 10653-16649 bp Feature: domain Description: N6_Mtase Location: 12663-13254 bp Feature: domain Description: N6_Mtase Location: 12663-13254 bp Feature: domain Description: COG4646 Location: 13845-16152 bp Feature: domain Description: COG4 64 6 Location: 1384 5-16152 bp Feature: domain Description: KOG0390 Location: 16419-16620 bp Feature: domain Description: KOG0390 Location: 164 19-16620 bp Feature: gene Location: 17102-17212 bp Feature: gene Location: 17209-18867 bp Feature: RT Description: RVT_N Location: 17254-17497 bp Feature: RT Description: RVT_N Location: 17254 -174 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17542-18190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1754 2-18190 bp Feature: domain Description: GIIM Note: maturase Location: 18247-18475 bp Feature: domain Description: GIIM Note: maturase Location: 1824 7-184 75 bp Feature: gene Location: 19001-19810 bp Feature: gene Location: 19880-20179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ALQG01000091.1 Streptococcus agalactiae FSL S3-170 ctg7180000007820, whole genome shotgun sequence (97038 bp)
Overview 1 RT 1: 87273-92259 bp Neighborhood of RT #1 [87273, 92285] HTH_XRE RVT-Retrons ImmA COG2932 Feature: gene Location: 87273-87512 bp Feature: gene Location: 88120-88464 bp Feature: domain Description: HTH_XRE Location: 88135-88303 bp Feature: domain Description: HTH_XRE Location: 88135 -88303 bp Feature: gene Location: 88776-90599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88902-89499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88902-89499 bp Feature: gene Location: 90731-91588 bp Feature: domain Description: ImmA Location: 90836-91220 bp Feature: domain Description: ImmA Location: 90836-91220 bp Feature: gene Location: 91599-92285 bp Feature: domain Description: COG2932 Location: 91644-92259 bp Feature: domain Description: COG2932 Location: 91644-9225 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ImmA (COG2856), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )

Seq: ALQG01000011.1 Streptococcus agalactiae FSL S3-170 ctg7180000007740, whole genome shotgun sequence (15206 bp)
Overview 1 RT 1: 11136-14772 bp Neighborhood of RT #1 [11136, 15137] PrgI TraC-F-type RVT_N RVT-GII GIIM Feature: gene Location: 11136-11489 bp Feature: domain Description: PrgI Location: 11148-11403 bp Feature: domain Description: PrgI Location: 11148-11403 bp Feature: gene Location: 11467-12930 bp Feature: domain Description: TraC-F-type Location: 12229-12619 bp Feature: domain Description: TraC-F-type Location: 12229-126 19 bp Feature: gene Location: 13464-15137 bp Feature: RT Description: RVT_N Location: 13536-13776 bp Feature: RT Description: RVT_N Location: 13536 -13776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13824-14484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13824-14484 bp Feature: domain Description: GIIM Note: maturase Location: 14553-14772 bp Feature: domain Description: GIIM Note: maturase Location: 14553-14772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)