myRT

myRT report for GCA_000290955.1_Baci_cere_VD022_G8177_V1

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Seq: JH792279.1 Bacillus cereus VD022 genomic scaffold supercont1.1, whole genome shotgun sequence (2739741 bp)
Overview 1 RT 1: 441699-445644 bp Neighborhood of RT #1 [441699, 445655] RVT-GII GIIM COG4824 CwlA SH3b SH3b Feature: gene Location: 441699-442015 bp Feature: gene Location: 442032-442403 bp Feature: gene Location: 442919-444193 bp Ori: EJP92618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443120-443735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4431 20-443735 bp Feature: domain Description: GIIM Note: maturase Location: 443795-444002 bp Feature: domain Description: GIIM Note: maturase Location: 443795-444002 bp Feature: gene Location: 444298-444723 bp Ori: EJP92619.1 Feature: domain Description: COG4824 Location: 444313-444703 bp Feature: domain Description: COG4824 Location: 44431 3-444703 bp Feature: gene Location: 444723-445655 bp Ori: EJP92620.1 Feature: domain Description: CwlA Location: 444732-445221 bp Feature: domain Description: CwlA Location: 444732-445221 bp Feature: domain Description: SH3b Location: 445260-445377 bp Feature: domain Description: SH3b Location: 445260-445377 bp Feature: domain Description: SH3b Location: 445485-445644 bp Feature: domain Description: SH3b Location: 445485-445644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4824 (Phage-related holin (Lysis protein) ), CwlA (COG5632), SH3b (smart00287)

Seq: JH792290.1 Bacillus cereus VD022 genomic scaffold supercont1.12, whole genome shotgun sequence (75701 bp)
Overview 1 RT 1: 32963-39654 bp Neighborhood of RT #1 [32963, 39654] AAA_31 CpaF RVT-GII Intron_maturas2 HNHc TadB Feature: gene Location: 32963-33799 bp Ori: EJP81470.1 Feature: domain Description: AAA_31 Location: 32999-33551 bp Feature: domain Description: AAA_31 Location: 32 999-33551 bp Feature: gene Location: 33787-34989 bp Ori: EJP81471.1 Feature: domain Description: CpaF Location: 34018-34960 bp Feature: domain Description: CpaF Location: 34018-34960 bp Feature: gene Location: 35581-37398 bp Ori: EJP81472.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35851-36676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35851-36676 bp Feature: domain Description: Intron_maturas2 Location: 36754-37048 bp Feature: domain Description: Intron_maturas2 Location: 36754-37048 bp Feature: domain Description: HNHc Note: nucleases Location: 37195-37369 bp Feature: domain Description: HNHc Note: nucleases Location: 37195-37369 bp Feature: gene Location: 37797-38747 bp Ori: EJP81473.1 Feature: domain Description: TadB Location: 37827-38679 bp Feature: domain Description: TadB Location: 3782 7-38679 bp Feature: gene Location: 38761-39654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_31 (pfam13614), CpaF (COG4962), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TadB (COG4965)

Seq: JH792288.1 Bacillus cereus VD022 genomic scaffold supercont1.10, whole genome shotgun sequence (110930 bp)
Overview 1 RT 1: 729-6748 bp Neighborhood of RT #1 [729, 6912] DEDD_Tnp_IS110 DDE_Tnp_1 RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 729-1460 bp Ori: EJP81934.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 744-1224 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 744-1224 bp Feature: gene Location: 2227-3285 bp Ori: EJP81935.1 Feature: domain Description: DDE_Tnp_1 Location: 2584-3271 bp Feature: domain Description: DDE_Tnp_1 Location: 2584-3 271 bp Feature: gene Location: 3790-4965 bp Ori: EJP81936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4075-4714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4075-4714 bp Feature: domain Description: GIIM Note: maturase Location: 4789-4957 bp Feature: domain Description: GIIM Note: maturase Location: 4789-4957 bp Feature: gene Location: 5712-5981 bp Ori: EJP81937.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 5733-5979 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 573 3 -5979 bp Feature: gene Location: 6154-6912 bp Ori: EJP81938.1 Feature: domain Description: Transposase_20 Location: 6517-6748 bp Feature: domain Description: Transposase_20 Location: 6517-6748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), Transposase_20 (pfam02371)

Seq: JH792286.1 Bacillus cereus VD022 genomic scaffold supercont1.8, whole genome shotgun sequence (178670 bp)
Overview 1 RT 1: 118519-125853 bp 2 RT 2: 164564-174055 bp Neighborhood of RT #1 [118519, 125853] HTH_XRE TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [164564, 174055] TrbL CwlT_like RVT-GII HNHc CwlT_like NlpD Spr Feature: gene Location: 118519-119079 bp Ori: EJP82749.1 Feature: domain Description: HTH_XRE Location: 118531-118702 bp Feature: domain Description: HTH_XRE Location: 118531-118702 bp Feature: gene Location: 119401-121401 bp Ori: EJP82750.1 Feature: domain Description: TraG-D_C Location: 119518-119878 bp Feature: domain Description: TraG-D_C Location: 119518-119878 bp Feature: domain Description: Ftsk_gamma Location: 120283-120463 bp Feature: domain Description: Ftsk_gamma Location: 120283-1204 63 bp Feature: domain Description: Ftsk_gamma Location: 120595-120733 bp Feature: domain Description: Ftsk_gamma Location: 120595-120733 bp Feature: gene Location: 121529-123346 bp Ori: EJP82751.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121799-122624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121799-122624 bp Feature: domain Description: Intron_maturas2 Location: 122702-122996 bp Feature: domain Description: Intron_maturas2 Location: 122702-122996 bp Feature: domain Description: HNHc Note: nucleases Location: 123143-123317 bp Feature: domain Description: HNHc Note: nucleases Location: 12314 3-123317 bp Feature: gene Location: 123938-125449 bp Feature: gene Location: 125467-125853 bp Feature: gene Location: 164564-168583 bp Ori: EJP82792.1 Feature: domain Description: TrbL Location: 164843-165341 bp Feature: domain Description: TrbL Location: 164 84 3-16534 1 bp Feature: gene Location: 168580-169731 bp Ori: EJP82793.1 Feature: domain Description: CwlT_like Location: 169429-169714 bp Feature: domain Description: CwlT_like Location: 1694 29-169714 bp Feature: gene Location: 170504-172300 bp Ori: EJP82794.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170762-171467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170762-1714 67 bp Feature: domain Description: HNHc Note: nucleases Location: 172028-172163 bp Feature: domain Description: HNHc Note: nucleases Location: 172028-172163 bp Feature: gene Location: 172369-173463 bp Ori: EJP82795.1 Feature: domain Description: CwlT_like Location: 172396-172582 bp Feature: domain Description: CwlT_like Location: 172396-172582 bp Feature: domain Description: NlpD Location: 172609-173032 bp Feature: domain Description: NlpD Location: 172609-173032 bp Feature: domain Description: Spr Location: 173068-173404 bp Feature: domain Description: Spr Location: 173068-1734 04 bp Feature: gene Location: 173480-174055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TrbL (pfam04610), CwlT_like, NlpD (COG0739), Spr (COG0791)

Seq: JH792281.1 Bacillus cereus VD022 genomic scaffold supercont1.3, whole genome shotgun sequence (510477 bp)
Overview 1 RT 1: 225008-231198 bp Neighborhood of RT #1 [225008, 231206] Peptidases_S8_Subtilisin_like_2 RVT-Retrons Phage_int_SAM_4 xerD Feature: gene Location: 225008-227479 bp Ori: EJP85983.1 Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 225851-226757 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 225 85 1-22675 7 bp Feature: gene Location: 227547-228806 bp Feature: gene Location: 228984-230084 bp Ori: EJP85985.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229212-229833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229212-229833 bp Feature: gene Location: 230617-231009 bp Ori: EJP85986.1 Feature: domain Description: Phage_int_SAM_4 Location: 230761-230959 bp Feature: domain Description: Phage_int_SAM_4 Location: 230761-23095 9 bp Feature: gene Location: 231009-231206 bp Ori: EJP85987.1 Feature: domain Description: xerD Location: 231048-231198 bp Feature: domain Description: xerD Location: 231048-231198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_Subtilisin_like_2 (cd04847), RVT-Retrons, Phage_int_SAM_4 (pfam13495), xerD (PRK02436)