myRT

myRT report for GCA_000291745.1_ASM29174v1

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Seq: DF126593.1 Pseudomonas aeruginosa NCMG1179 DNA, contig: scaffold00001, whole genome shotgun sequence (6910294 bp)
Overview 1 RT 1: 4653707-4662551 bp 2 RT 2: 4678815-4689110 bp Neighborhood of RT #1 [4653707, 4662559] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [4678815, 4689121] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 4653707-4654381 bp Feature: domain Description: NTP_transferase_like_1 Location: 4653713-4654352 bp Feature: domain Description: NTP_transferase_like_1 Location: 465371 3-4654352 bp Feature: gene Location: 4654378-4655394 bp Feature: domain Description: COG3178 Location: 4654381-4655380 bp Feature: domain Description: COG31 78 Location: 4654381 -4655380 bp Feature: gene Location: 4656667-4658379 bp Feature: RT Description: RVT_N Location: 4656724-4656967 bp Feature: RT Description: RVT_N Location: 4656724-4656967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657012-4657648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465701 2-4657648 bp Feature: domain Description: YkfC Location: 4657855-4658008 bp Feature: domain Description: YkfC Location: 4657855-4658008 bp Feature: domain Description: HNH Note: nucleases Location: 4658185-4658323 bp Feature: domain Description: HNH Note: nucleases Location: 46581 85-4658323 bp Feature: gene Location: 4658512-4661286 bp Feature: domain Description: LptD Location: 4658707-4661272 bp Feature: domain Description: LptD Location: 4658707-4661 272 bp Feature: gene Location: 4661345-4662559 bp Feature: domain Description: PRK10770 Location: 4661357-4662551 bp Feature: domain Description: PRK1 0770 Location: 4661 357-4662551 bp Feature: gene Location: 4678815-4680668 bp Feature: domain Description: PRK05658 Location: 4678827-4680666 bp Feature: domain Description: PRK05658 Location: 4678827-4680666 bp Feature: gene Location: 4680775-4684512 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4680883-4681540 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4680883-4681 540 bp Feature: domain Description: PRK09776 Location: 4681753-4682224 bp Feature: domain Description: PRK09776 Location: 4681 753-4682224 bp Feature: domain Description: PAS Location: 4682296-4682806 bp Feature: domain Description: PAS Location: 4682296-4682806 bp Feature: domain Description: PRK10060 Location: 4682815-4684462 bp Feature: domain Description: PRK1 0060 Location: 468281 5-4684462 bp Feature: gene Location: 4685593-4687278 bp Feature: RT Description: RVT_N Location: 4685650-4685890 bp Feature: RT Description: RVT_N Location: 4685650-4685890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685938-4686574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685938-4686574 bp Feature: domain Description: GIIM Note: maturase Location: 4686628-4686859 bp Feature: domain Description: GIIM Note: maturase Location: 4686628-4686859 bp Feature: domain Description: HNH Note: nucleases Location: 4687111-4687249 bp Feature: domain Description: HNH Note: nucleases Location: 46871 1 1 -4687249 bp Feature: gene Location: 4687604-4687741 bp Feature: gene Location: 4688000-4689121 bp Feature: domain Description: COG3177 Location: 4688018-4689110 bp Feature: domain Description: COG31 77 Location: 468801 8-46891 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )